Hb_000215_140

Information

Type -
Description -
Location Contig215: 108980-119302
Sequence    

Annotation

kegg
ID mdm:103426924
description phosphoinositide 3-kinase regulatory subunit 4-like
nr
ID XP_008363230.1
description PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
swissprot
ID Q54S77
description Probable serine/threonine-protein kinase vps15 OS=Dictyostelium discoideum GN=vps15 PE=3 SV=1
trembl
ID B9RKG4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1049310 PE=4 SV=1
Gene Ontology
ID GO:0005737
description probable serine threonine-protein kinase vps15 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22180: 109320-112953 , PASA_asmbl_22181: 112954-113212 , PASA_asmbl_22184: 114156-114707 , PASA_asmbl_22185: 114716-117832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_140 0.0 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
2 Hb_012490_090 0.0664563178 - - PREDICTED: myosin-17 [Jatropha curcas]
3 Hb_000412_010 0.0674242214 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000313_120 0.0687405673 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
5 Hb_000720_130 0.0752865699 - - hypothetical protein PRUPE_ppa012392mg [Prunus persica]
6 Hb_000230_260 0.0754466961 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
7 Hb_001963_100 0.0794883886 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
8 Hb_003060_060 0.0836196086 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
9 Hb_013358_010 0.0836307885 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
10 Hb_001217_050 0.0843916715 - - actin binding protein, putative [Ricinus communis]
11 Hb_071130_010 0.0855250978 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
12 Hb_000696_050 0.0876809732 - - PREDICTED: CSC1-like protein At4g35870 [Jatropha curcas]
13 Hb_004019_120 0.088346632 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
14 Hb_002063_020 0.0892517492 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
15 Hb_140627_020 0.0905619573 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
16 Hb_000556_220 0.0916414506 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
17 Hb_001628_070 0.0924142074 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_000667_030 0.092461108 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
19 Hb_004182_050 0.0929491911 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
20 Hb_001550_060 0.0949046543 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000215_140 Hb_000215_140 Hb_012490_090 Hb_012490_090 Hb_000215_140--Hb_012490_090 Hb_000412_010 Hb_000412_010 Hb_000215_140--Hb_000412_010 Hb_000313_120 Hb_000313_120 Hb_000215_140--Hb_000313_120 Hb_000720_130 Hb_000720_130 Hb_000215_140--Hb_000720_130 Hb_000230_260 Hb_000230_260 Hb_000215_140--Hb_000230_260 Hb_001963_100 Hb_001963_100 Hb_000215_140--Hb_001963_100 Hb_012490_090--Hb_000313_120 Hb_146224_010 Hb_146224_010 Hb_012490_090--Hb_146224_010 Hb_002260_050 Hb_002260_050 Hb_012490_090--Hb_002260_050 Hb_001217_050 Hb_001217_050 Hb_012490_090--Hb_001217_050 Hb_013358_010 Hb_013358_010 Hb_012490_090--Hb_013358_010 Hb_003060_060 Hb_003060_060 Hb_000412_010--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_000412_010--Hb_000395_070 Hb_159558_010 Hb_159558_010 Hb_000412_010--Hb_159558_010 Hb_001550_060 Hb_001550_060 Hb_000412_010--Hb_001550_060 Hb_001628_070 Hb_001628_070 Hb_000412_010--Hb_001628_070 Hb_000412_010--Hb_000230_260 Hb_000789_250 Hb_000789_250 Hb_000313_120--Hb_000789_250 Hb_003058_260 Hb_003058_260 Hb_000313_120--Hb_003058_260 Hb_000313_120--Hb_001628_070 Hb_000317_370 Hb_000317_370 Hb_000313_120--Hb_000317_370 Hb_000313_120--Hb_000412_010 Hb_007632_010 Hb_007632_010 Hb_000720_130--Hb_007632_010 Hb_007818_010 Hb_007818_010 Hb_000720_130--Hb_007818_010 Hb_000720_130--Hb_000412_010 Hb_140627_020 Hb_140627_020 Hb_000720_130--Hb_140627_020 Hb_002909_120 Hb_002909_120 Hb_000720_130--Hb_002909_120 Hb_071130_010 Hb_071130_010 Hb_000230_260--Hb_071130_010 Hb_000069_120 Hb_000069_120 Hb_000230_260--Hb_000069_120 Hb_041327_010 Hb_041327_010 Hb_000230_260--Hb_041327_010 Hb_000230_260--Hb_003060_060 Hb_085781_020 Hb_085781_020 Hb_000230_260--Hb_085781_020 Hb_025193_040 Hb_025193_040 Hb_001963_100--Hb_025193_040 Hb_001963_100--Hb_000230_260 Hb_001963_100--Hb_000412_010 Hb_001963_100--Hb_007632_010 Hb_000667_030 Hb_000667_030 Hb_001963_100--Hb_000667_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.04049 11.0495 4.15071 8.47074 10.9849 7.54792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13964 4.75439 11.4633 11.0419 9.59174

CAGE analysis