Hb_003058_260

Information

Type -
Description -
Location Contig3058: 228412-243427
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13040g
description POPTRDRAFT_757540; hypothetical protein
nr
ID XP_002304511.1
description hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
swissprot
ID O81742
description Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2
trembl
ID B9GWT9
description Beta-adaptin-like protein OS=Populus trichocarpa GN=POPTR_0003s13040g PE=3 SV=1
Gene Ontology
ID GO:0030131
description beta-adaptin-like protein b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32347: 228669-242705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_260 0.0 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
2 Hb_012632_010 0.0503362525 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
3 Hb_002071_070 0.0595897031 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
4 Hb_004787_050 0.063628298 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
5 Hb_000856_040 0.0645118584 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
6 Hb_000313_120 0.0661953598 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
7 Hb_001998_240 0.066562022 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
8 Hb_001221_080 0.0701834718 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
9 Hb_002026_150 0.0710863983 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
10 Hb_000441_220 0.07261543 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_105105_010 0.0731440434 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
12 Hb_002890_130 0.0747208542 - - tip120, putative [Ricinus communis]
13 Hb_005137_040 0.0748108776 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
14 Hb_007894_110 0.0748321839 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
15 Hb_001408_140 0.0787467821 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
16 Hb_000088_170 0.079381186 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
17 Hb_002205_250 0.0806329138 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
18 Hb_000046_500 0.0813209113 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
19 Hb_012506_030 0.0819834879 - - AP-2 complex subunit alpha, putative [Ricinus communis]
20 Hb_004030_080 0.082116591 - - hypothetical protein JCGZ_25110 [Jatropha curcas]

Gene co-expression network

sample Hb_003058_260 Hb_003058_260 Hb_012632_010 Hb_012632_010 Hb_003058_260--Hb_012632_010 Hb_002071_070 Hb_002071_070 Hb_003058_260--Hb_002071_070 Hb_004787_050 Hb_004787_050 Hb_003058_260--Hb_004787_050 Hb_000856_040 Hb_000856_040 Hb_003058_260--Hb_000856_040 Hb_000313_120 Hb_000313_120 Hb_003058_260--Hb_000313_120 Hb_001998_240 Hb_001998_240 Hb_003058_260--Hb_001998_240 Hb_012632_010--Hb_002071_070 Hb_002890_130 Hb_002890_130 Hb_012632_010--Hb_002890_130 Hb_012632_010--Hb_000856_040 Hb_002830_010 Hb_002830_010 Hb_012632_010--Hb_002830_010 Hb_004374_110 Hb_004374_110 Hb_012632_010--Hb_004374_110 Hb_002071_070--Hb_000856_040 Hb_002042_050 Hb_002042_050 Hb_002071_070--Hb_002042_050 Hb_002071_070--Hb_002890_130 Hb_002071_070--Hb_002830_010 Hb_004787_050--Hb_001998_240 Hb_002675_130 Hb_002675_130 Hb_004787_050--Hb_002675_130 Hb_007894_110 Hb_007894_110 Hb_004787_050--Hb_007894_110 Hb_003943_110 Hb_003943_110 Hb_004787_050--Hb_003943_110 Hb_001635_120 Hb_001635_120 Hb_004787_050--Hb_001635_120 Hb_001300_010 Hb_001300_010 Hb_000856_040--Hb_001300_010 Hb_105105_010 Hb_105105_010 Hb_000856_040--Hb_105105_010 Hb_004994_240 Hb_004994_240 Hb_000856_040--Hb_004994_240 Hb_000789_250 Hb_000789_250 Hb_000313_120--Hb_000789_250 Hb_001628_070 Hb_001628_070 Hb_000313_120--Hb_001628_070 Hb_000215_140 Hb_000215_140 Hb_000313_120--Hb_000215_140 Hb_000317_370 Hb_000317_370 Hb_000313_120--Hb_000317_370 Hb_000412_010 Hb_000412_010 Hb_000313_120--Hb_000412_010 Hb_002053_150 Hb_002053_150 Hb_001998_240--Hb_002053_150 Hb_006816_280 Hb_006816_280 Hb_001998_240--Hb_006816_280 Hb_001998_240--Hb_003943_110 Hb_001998_240--Hb_002675_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1236 24.9015 24.9648 26.1303 21.4465 18.2296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8955 15.3484 31.833 28.7362 23.937

CAGE analysis