Hb_004994_240

Information

Type -
Description -
Location Contig4994: 195635-202938
Sequence    

Annotation

kegg
ID pmum:103331888
description DEAD-box ATP-dependent RNA helicase 8
nr
ID XP_007220665.1
description hypothetical protein PRUPE_ppa004633mg [Prunus persica]
swissprot
ID Q8RXK6
description DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1
trembl
ID M5X7C7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004633mg PE=3 SV=1
Gene Ontology
ID GO:0000932
description dead-box atp-dependent rna helicase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45645: 195570-202868 , PASA_asmbl_45646: 201705-202130 , PASA_asmbl_45647: 196545-197027
cDNA
(Sanger)
(ID:Location)		 033_A02.ab1: 195570-196270 , 041_A09.ab1: 195570-196303 , 050_M20.ab1: 195570-196078

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004994_240 0.0 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
2 Hb_001300_010 0.0287258522 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
3 Hb_002232_480 0.0451677163 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
4 Hb_002492_010 0.0557864243 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
5 Hb_012239_020 0.0642258151 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
6 Hb_003398_080 0.0647365765 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
7 Hb_000856_040 0.0651569973 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
8 Hb_000086_420 0.0656587232 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
9 Hb_007017_040 0.0657095583 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
10 Hb_004109_320 0.0668746775 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
11 Hb_001699_010 0.066874715 - - drought-inducible protein [Manihot esculenta]
12 Hb_001366_090 0.0688039431 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
13 Hb_000521_330 0.0692679806 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000120_910 0.0695155808 - - plant ubiquilin, putative [Ricinus communis]
15 Hb_000029_060 0.0712045852 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
16 Hb_000327_140 0.0724880926 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
17 Hb_001481_060 0.0737801184 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
18 Hb_000120_030 0.0739509418 - - PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]
19 Hb_011360_050 0.0743507092 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
20 Hb_000087_060 0.0745391965 - - protein transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_004994_240 Hb_004994_240 Hb_001300_010 Hb_001300_010 Hb_004994_240--Hb_001300_010 Hb_002232_480 Hb_002232_480 Hb_004994_240--Hb_002232_480 Hb_002492_010 Hb_002492_010 Hb_004994_240--Hb_002492_010 Hb_012239_020 Hb_012239_020 Hb_004994_240--Hb_012239_020 Hb_003398_080 Hb_003398_080 Hb_004994_240--Hb_003398_080 Hb_000856_040 Hb_000856_040 Hb_004994_240--Hb_000856_040 Hb_001300_010--Hb_003398_080 Hb_001300_010--Hb_002492_010 Hb_000120_910 Hb_000120_910 Hb_001300_010--Hb_000120_910 Hb_001300_010--Hb_002232_480 Hb_001300_010--Hb_000856_040 Hb_011360_050 Hb_011360_050 Hb_002232_480--Hb_011360_050 Hb_000802_090 Hb_000802_090 Hb_002232_480--Hb_000802_090 Hb_001366_090 Hb_001366_090 Hb_002232_480--Hb_001366_090 Hb_007017_040 Hb_007017_040 Hb_002232_480--Hb_007017_040 Hb_001716_020 Hb_001716_020 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_001089_050 Hb_001089_050 Hb_002492_010--Hb_001089_050 Hb_004143_100 Hb_004143_100 Hb_002492_010--Hb_004143_100 Hb_000738_020 Hb_000738_020 Hb_012239_020--Hb_000738_020 Hb_000484_130 Hb_000484_130 Hb_012239_020--Hb_000484_130 Hb_000086_420 Hb_000086_420 Hb_012239_020--Hb_000086_420 Hb_012239_020--Hb_001300_010 Hb_000327_140 Hb_000327_140 Hb_012239_020--Hb_000327_140 Hb_000861_080 Hb_000861_080 Hb_003398_080--Hb_000861_080 Hb_000402_230 Hb_000402_230 Hb_003398_080--Hb_000402_230 Hb_001545_150 Hb_001545_150 Hb_003398_080--Hb_001545_150 Hb_003398_080--Hb_000120_910 Hb_002071_070 Hb_002071_070 Hb_000856_040--Hb_002071_070 Hb_003058_260 Hb_003058_260 Hb_000856_040--Hb_003058_260 Hb_012632_010 Hb_012632_010 Hb_000856_040--Hb_012632_010 Hb_105105_010 Hb_105105_010 Hb_000856_040--Hb_105105_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5268 41.2746 36.0197 34.3265 20.0343 17.4368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6783 22.4796 22.5288 24.9576 23.6386

CAGE analysis