Hb_011360_050

Information

Type -
Description -
Location Contig11360: 21635-23685
Sequence    

Annotation

kegg
ID rcu:RCOM_0524510
description hypothetical protein
nr
ID XP_012084796.1
description PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
swissprot
ID Q9LIB3
description BAG family molecular chaperone regulator 8, chloroplastic OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1
trembl
ID A0A067JTF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19915 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04081: 22193-23175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011360_050 0.0 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
2 Hb_000802_090 0.0426769801 - - ornithine aminotransferase, putative [Ricinus communis]
3 Hb_007839_020 0.0568581412 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002232_480 0.0591010855 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
5 Hb_002982_020 0.0602576306 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
6 Hb_001329_200 0.0669845069 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
7 Hb_000089_180 0.0709639576 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
8 Hb_002110_080 0.0731294715 - - FH interacting protein 1 [Theobroma cacao]
9 Hb_004994_240 0.0743507092 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
10 Hb_003688_180 0.0745829033 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
11 Hb_003906_200 0.0769437945 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
12 Hb_000327_140 0.0776419931 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
13 Hb_001408_110 0.0781994948 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
14 Hb_010407_080 0.0782843123 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
15 Hb_007017_040 0.0787824829 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
16 Hb_004143_100 0.0794497174 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001328_080 0.0815810651 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
18 Hb_003398_080 0.0817109292 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
19 Hb_002915_060 0.0819726099 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
20 Hb_000347_400 0.0820730017 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_011360_050 Hb_011360_050 Hb_000802_090 Hb_000802_090 Hb_011360_050--Hb_000802_090 Hb_007839_020 Hb_007839_020 Hb_011360_050--Hb_007839_020 Hb_002232_480 Hb_002232_480 Hb_011360_050--Hb_002232_480 Hb_002982_020 Hb_002982_020 Hb_011360_050--Hb_002982_020 Hb_001329_200 Hb_001329_200 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180 Hb_000802_090--Hb_002232_480 Hb_000802_090--Hb_001329_200 Hb_003398_080 Hb_003398_080 Hb_000802_090--Hb_003398_080 Hb_000205_240 Hb_000205_240 Hb_000802_090--Hb_000205_240 Hb_000802_090--Hb_007839_020 Hb_010407_080 Hb_010407_080 Hb_007839_020--Hb_010407_080 Hb_007839_020--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_007839_020--Hb_001328_080 Hb_001408_110 Hb_001408_110 Hb_007839_020--Hb_001408_110 Hb_022425_060 Hb_022425_060 Hb_007839_020--Hb_022425_060 Hb_004994_240 Hb_004994_240 Hb_002232_480--Hb_004994_240 Hb_001300_010 Hb_001300_010 Hb_002232_480--Hb_001300_010 Hb_001366_090 Hb_001366_090 Hb_002232_480--Hb_001366_090 Hb_007017_040 Hb_007017_040 Hb_002232_480--Hb_007017_040 Hb_001269_380 Hb_001269_380 Hb_002982_020--Hb_001269_380 Hb_012092_050 Hb_012092_050 Hb_002982_020--Hb_012092_050 Hb_006452_120 Hb_006452_120 Hb_002982_020--Hb_006452_120 Hb_000778_010 Hb_000778_010 Hb_002982_020--Hb_000778_010 Hb_001221_430 Hb_001221_430 Hb_002982_020--Hb_001221_430 Hb_009615_160 Hb_009615_160 Hb_001329_200--Hb_009615_160 Hb_001329_200--Hb_022425_060 Hb_001329_200--Hb_001328_080 Hb_004128_130 Hb_004128_130 Hb_000089_180--Hb_004128_130 Hb_015026_130 Hb_015026_130 Hb_000089_180--Hb_015026_130 Hb_000085_450 Hb_000085_450 Hb_000089_180--Hb_000085_450 Hb_004143_100 Hb_004143_100 Hb_000089_180--Hb_004143_100 Hb_000089_180--Hb_001408_110 Hb_004037_020 Hb_004037_020 Hb_000089_180--Hb_004037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.05089 8.91521 5.52418 8.26864 3.43965 3.63911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.68001 4.24467 3.885 5.53627 4.13788

CAGE analysis