Hb_001221_430

Information

Type -
Description -
Location Contig1221: 287859-297754
Sequence    

Annotation

kegg
ID rcu:RCOM_1505620
description hypothetical protein
nr
ID XP_012090672.1
description PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
swissprot
ID Q9FMV0
description F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1
trembl
ID A0A067JFB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26432 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06753: 287917-293770 , PASA_asmbl_06756: 294602-295590 , PASA_asmbl_06757: 296861-297576
cDNA
(Sanger)
(ID:Location)		 018_L07.ab1: 291533-293770 , 025_H16.ab1: 291466-293770 , 040_H24.ab1: 291491-293770

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_430 0.0 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
2 Hb_000173_280 0.0486988472 - - Speckle-type POZ protein, putative [Ricinus communis]
3 Hb_002456_010 0.0714427579 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
4 Hb_017387_010 0.074531763 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
5 Hb_001359_050 0.0754375425 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000107_660 0.0770736197 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
7 Hb_000460_080 0.0772500799 - - acyl-coenzyme A binding domain containing, putative [Ricinus communis]
8 Hb_000778_010 0.078416051 - - hypothetical protein [Bacillus subtilis]
9 Hb_003544_030 0.0804416209 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
10 Hb_003544_060 0.0805295099 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
11 Hb_001221_110 0.0809176191 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
12 Hb_001876_050 0.0818663447 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
13 Hb_004324_130 0.082502772 - - polypyrimidine tract binding protein, putative [Ricinus communis]
14 Hb_002982_020 0.0830639616 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
15 Hb_003906_200 0.083817279 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
16 Hb_093458_040 0.0843556137 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
17 Hb_019863_070 0.0843796425 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
18 Hb_001408_140 0.0846704891 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
19 Hb_001434_080 0.0849305745 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
20 Hb_000868_090 0.0854217648 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_430 Hb_001221_430 Hb_000173_280 Hb_000173_280 Hb_001221_430--Hb_000173_280 Hb_002456_010 Hb_002456_010 Hb_001221_430--Hb_002456_010 Hb_017387_010 Hb_017387_010 Hb_001221_430--Hb_017387_010 Hb_001359_050 Hb_001359_050 Hb_001221_430--Hb_001359_050 Hb_000107_660 Hb_000107_660 Hb_001221_430--Hb_000107_660 Hb_000460_080 Hb_000460_080 Hb_001221_430--Hb_000460_080 Hb_000173_280--Hb_001359_050 Hb_164390_010 Hb_164390_010 Hb_000173_280--Hb_164390_010 Hb_006570_080 Hb_006570_080 Hb_000173_280--Hb_006570_080 Hb_000778_010 Hb_000778_010 Hb_000173_280--Hb_000778_010 Hb_005588_060 Hb_005588_060 Hb_000173_280--Hb_005588_060 Hb_000111_290 Hb_000111_290 Hb_002456_010--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_002456_010--Hb_001876_050 Hb_000614_240 Hb_000614_240 Hb_002456_010--Hb_000614_240 Hb_004324_130 Hb_004324_130 Hb_002456_010--Hb_004324_130 Hb_003544_060 Hb_003544_060 Hb_002456_010--Hb_003544_060 Hb_000920_300 Hb_000920_300 Hb_002456_010--Hb_000920_300 Hb_006452_120 Hb_006452_120 Hb_017387_010--Hb_006452_120 Hb_003544_030 Hb_003544_030 Hb_017387_010--Hb_003544_030 Hb_000574_450 Hb_000574_450 Hb_017387_010--Hb_000574_450 Hb_001434_080 Hb_001434_080 Hb_017387_010--Hb_001434_080 Hb_000962_030 Hb_000962_030 Hb_017387_010--Hb_000962_030 Hb_024958_010 Hb_024958_010 Hb_001359_050--Hb_024958_010 Hb_008725_230 Hb_008725_230 Hb_001359_050--Hb_008725_230 Hb_001221_110 Hb_001221_110 Hb_001359_050--Hb_001221_110 Hb_001359_050--Hb_006570_080 Hb_003464_090 Hb_003464_090 Hb_001359_050--Hb_003464_090 Hb_003835_070 Hb_003835_070 Hb_000107_660--Hb_003835_070 Hb_000107_660--Hb_003544_060 Hb_000012_260 Hb_000012_260 Hb_000107_660--Hb_000012_260 Hb_000107_660--Hb_002456_010 Hb_105105_010 Hb_105105_010 Hb_000107_660--Hb_105105_010 Hb_002217_170 Hb_002217_170 Hb_000107_660--Hb_002217_170 Hb_000477_050 Hb_000477_050 Hb_000460_080--Hb_000477_050 Hb_002071_070 Hb_002071_070 Hb_000460_080--Hb_002071_070 Hb_002728_080 Hb_002728_080 Hb_000460_080--Hb_002728_080 Hb_000120_280 Hb_000120_280 Hb_000460_080--Hb_000120_280 Hb_002989_020 Hb_002989_020 Hb_000460_080--Hb_002989_020 Hb_000460_080--Hb_001434_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.99935 16.7879 11.5926 16.3118 12.0055 9.07113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7709 15.1168 12.9374 18.3371 9.1493

CAGE analysis