Hb_000778_010

Information

Type -
Description -
Location Contig778: 7422-9044
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_044445449.1
description hypothetical protein [Bacillus subtilis]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000778_010 0.0 - - hypothetical protein [Bacillus subtilis]
2 Hb_000392_420 0.0513191207 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
3 Hb_000663_060 0.0520334635 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
4 Hb_000365_230 0.0581492828 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
5 Hb_164390_010 0.0589404626 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
6 Hb_007472_070 0.0624055943 - - cir, putative [Ricinus communis]
7 Hb_000173_280 0.0630200347 - - Speckle-type POZ protein, putative [Ricinus communis]
8 Hb_004705_170 0.0641906424 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
9 Hb_001828_180 0.0647518266 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
10 Hb_004109_320 0.0652151525 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
11 Hb_002007_080 0.0661480648 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
12 Hb_002071_070 0.0676416794 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
13 Hb_007894_150 0.067864946 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
14 Hb_002989_020 0.068238179 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
15 Hb_000574_450 0.0682400226 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
16 Hb_000349_260 0.0689557146 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
17 Hb_189216_010 0.0698175754 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
18 Hb_008748_030 0.0702803041 - - conserved hypothetical protein [Ricinus communis]
19 Hb_023001_040 0.0705271238 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
20 Hb_003058_120 0.0706846607 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000778_010 Hb_000778_010 Hb_000392_420 Hb_000392_420 Hb_000778_010--Hb_000392_420 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_000173_280 Hb_000173_280 Hb_000778_010--Hb_000173_280 Hb_003861_060 Hb_003861_060 Hb_000392_420--Hb_003861_060 Hb_002007_080 Hb_002007_080 Hb_000392_420--Hb_002007_080 Hb_000392_420--Hb_164390_010 Hb_003058_120 Hb_003058_120 Hb_000392_420--Hb_003058_120 Hb_093458_040 Hb_093458_040 Hb_000392_420--Hb_093458_040 Hb_001828_180 Hb_001828_180 Hb_000663_060--Hb_001828_180 Hb_001269_130 Hb_001269_130 Hb_000663_060--Hb_001269_130 Hb_000363_190 Hb_000363_190 Hb_000663_060--Hb_000363_190 Hb_023001_040 Hb_023001_040 Hb_000663_060--Hb_023001_040 Hb_163175_010 Hb_163175_010 Hb_000663_060--Hb_163175_010 Hb_000365_230--Hb_164390_010 Hb_004109_320 Hb_004109_320 Hb_000365_230--Hb_004109_320 Hb_007894_150 Hb_007894_150 Hb_000365_230--Hb_007894_150 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_062226_130 Hb_062226_130 Hb_000365_230--Hb_062226_130 Hb_164390_010--Hb_007894_150 Hb_164390_010--Hb_163175_010 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_164390_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_164390_010--Hb_171900_090 Hb_004705_170 Hb_004705_170 Hb_007472_070--Hb_004705_170 Hb_000699_150 Hb_000699_150 Hb_007472_070--Hb_000699_150 Hb_000215_300 Hb_000215_300 Hb_007472_070--Hb_000215_300 Hb_000347_250 Hb_000347_250 Hb_007472_070--Hb_000347_250 Hb_006059_040 Hb_006059_040 Hb_007472_070--Hb_006059_040 Hb_001221_430 Hb_001221_430 Hb_000173_280--Hb_001221_430 Hb_001359_050 Hb_001359_050 Hb_000173_280--Hb_001359_050 Hb_000173_280--Hb_164390_010 Hb_006570_080 Hb_006570_080 Hb_000173_280--Hb_006570_080 Hb_005588_060 Hb_005588_060 Hb_000173_280--Hb_005588_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0766 23.2088 27.599 32.3569 15.999 15.8773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2534 24.2774 22.2327 30.0055 23.0694

CAGE analysis