Hb_002400_340

Information

Type -
Description -
Location Contig2400: 253554-258288
Sequence    

Annotation

kegg
ID mdm:103456225
description probable beta-1,3-galactosyltransferase 9
nr
ID XP_012076500.1
description PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
swissprot
ID Q94A05
description Probable beta-1,3-galactosyltransferase 10 OS=Arabidopsis thaliana GN=B3GALT10 PE=1 SV=1
trembl
ID A0A067KMP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07136 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25180: 249158-253253 , PASA_asmbl_25184: 257033-258082 , PASA_asmbl_25185: 257435-257604
cDNA
(Sanger)
(ID:Location)		 047_G01.ab1: 249164-253055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_340 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
2 Hb_164390_010 0.0541750518 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
3 Hb_004109_320 0.0651997955 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
4 Hb_000339_040 0.0675676778 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
5 Hb_163175_010 0.0692981175 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
6 Hb_001456_060 0.0696316666 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
7 Hb_171900_090 0.0703326045 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009911_030 0.0709049284 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
9 Hb_010921_050 0.0710376572 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
10 Hb_000189_600 0.0714282506 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
11 Hb_001959_110 0.0718707806 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
12 Hb_007894_150 0.0722422014 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
13 Hb_183510_020 0.0743188629 - - coated vesicle membrane protein, putative [Ricinus communis]
14 Hb_008114_040 0.0743344206 - - Fanconi anemia group D2 [Gossypium arboreum]
15 Hb_000365_230 0.0749638721 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
16 Hb_000477_050 0.075410892 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
17 Hb_000617_230 0.0762722295 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
18 Hb_003861_060 0.0773218152 - - PREDICTED: treacle protein [Jatropha curcas]
19 Hb_003428_010 0.0777185896 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
20 Hb_000329_800 0.078613159 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002400_340 Hb_002400_340 Hb_164390_010 Hb_164390_010 Hb_002400_340--Hb_164390_010 Hb_004109_320 Hb_004109_320 Hb_002400_340--Hb_004109_320 Hb_000339_040 Hb_000339_040 Hb_002400_340--Hb_000339_040 Hb_163175_010 Hb_163175_010 Hb_002400_340--Hb_163175_010 Hb_001456_060 Hb_001456_060 Hb_002400_340--Hb_001456_060 Hb_171900_090 Hb_171900_090 Hb_002400_340--Hb_171900_090 Hb_000365_230 Hb_000365_230 Hb_164390_010--Hb_000365_230 Hb_007894_150 Hb_007894_150 Hb_164390_010--Hb_007894_150 Hb_164390_010--Hb_163175_010 Hb_164390_010--Hb_004109_320 Hb_164390_010--Hb_171900_090 Hb_004109_320--Hb_007894_150 Hb_004109_320--Hb_000365_230 Hb_002014_010 Hb_002014_010 Hb_004109_320--Hb_002014_010 Hb_002849_130 Hb_002849_130 Hb_004109_320--Hb_002849_130 Hb_000477_050 Hb_000477_050 Hb_004109_320--Hb_000477_050 Hb_004052_080 Hb_004052_080 Hb_000339_040--Hb_004052_080 Hb_000339_040--Hb_001456_060 Hb_002876_230 Hb_002876_230 Hb_000339_040--Hb_002876_230 Hb_009911_030 Hb_009911_030 Hb_000339_040--Hb_009911_030 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_000339_040--Hb_005867_070 Hb_163175_010--Hb_171900_090 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170 Hb_001456_060--Hb_009911_030 Hb_004994_010 Hb_004994_010 Hb_001456_060--Hb_004994_010 Hb_001456_060--Hb_004052_080 Hb_001456_060--Hb_002876_230 Hb_001456_060--Hb_005867_070 Hb_000789_320 Hb_000789_320 Hb_171900_090--Hb_000789_320 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_000176_020 Hb_000176_020 Hb_171900_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_171900_090--Hb_001025_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.86716 6.32684 8.48332 6.26094 4.70429 5.60683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08614 7.61287 4.71211 8.65235 6.27937

CAGE analysis