Hb_001959_110

Information

Type -
Description -
Location Contig1959: 109914-112626
Sequence    

Annotation

kegg
ID rcu:RCOM_1024270
description Phosphoglycolate phosphatase, putative
nr
ID XP_012077642.1
description PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
swissprot
ID Q8RYE9
description Haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 OS=Arabidopsis thaliana GN=At2g33255 PE=2 SV=1
trembl
ID B9RWT6
description Phosphoglycolate phosphatase, putative OS=Ricinus communis GN=RCOM_1024270 PE=4 SV=1
Gene Ontology
ID GO:0009507
description haloacid dehalogenase-like hydrolase domain-containing protein at2g33255

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19631: 111803-112592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_110 0.0 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
2 Hb_000313_220 0.0573220751 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
3 Hb_000976_140 0.0622201152 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
4 Hb_000331_090 0.0628708103 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
5 Hb_163175_010 0.0629477166 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
6 Hb_000035_470 0.0671842746 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
7 Hb_001922_150 0.0681900878 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
8 Hb_002986_100 0.068607252 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
9 Hb_004586_060 0.0700598766 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
10 Hb_014834_150 0.0704068771 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000816_250 0.0708520571 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
12 Hb_002849_130 0.0709266759 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
13 Hb_000297_160 0.0709674027 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
14 Hb_002400_340 0.0718707806 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
15 Hb_171900_090 0.0725087879 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002936_010 0.0729490186 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
17 Hb_000336_210 0.0735356137 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
18 Hb_172632_120 0.0743005791 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002028_210 0.0746691263 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
20 Hb_093458_040 0.0749787922 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]

Gene co-expression network

sample Hb_001959_110 Hb_001959_110 Hb_000313_220 Hb_000313_220 Hb_001959_110--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_001959_110--Hb_000976_140 Hb_000331_090 Hb_000331_090 Hb_001959_110--Hb_000331_090 Hb_163175_010 Hb_163175_010 Hb_001959_110--Hb_163175_010 Hb_000035_470 Hb_000035_470 Hb_001959_110--Hb_000035_470 Hb_001922_150 Hb_001922_150 Hb_001959_110--Hb_001922_150 Hb_002849_130 Hb_002849_130 Hb_000313_220--Hb_002849_130 Hb_000313_220--Hb_000976_140 Hb_015807_050 Hb_015807_050 Hb_000313_220--Hb_015807_050 Hb_004452_110 Hb_004452_110 Hb_000313_220--Hb_004452_110 Hb_005730_040 Hb_005730_040 Hb_000313_220--Hb_005730_040 Hb_000976_140--Hb_005730_040 Hb_000976_140--Hb_002849_130 Hb_000976_140--Hb_015807_050 Hb_000976_140--Hb_001922_150 Hb_000170_090 Hb_000170_090 Hb_000976_140--Hb_000170_090 Hb_000207_150 Hb_000207_150 Hb_000331_090--Hb_000207_150 Hb_000331_090--Hb_163175_010 Hb_001405_210 Hb_001405_210 Hb_000331_090--Hb_001405_210 Hb_000720_040 Hb_000720_040 Hb_000331_090--Hb_000720_040 Hb_000107_230 Hb_000107_230 Hb_000331_090--Hb_000107_230 Hb_164390_010 Hb_164390_010 Hb_163175_010--Hb_164390_010 Hb_171900_090 Hb_171900_090 Hb_163175_010--Hb_171900_090 Hb_000365_230 Hb_000365_230 Hb_163175_010--Hb_000365_230 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170 Hb_004319_080 Hb_004319_080 Hb_000035_470--Hb_004319_080 Hb_000035_470--Hb_015807_050 Hb_001021_150 Hb_001021_150 Hb_000035_470--Hb_001021_150 Hb_168978_030 Hb_168978_030 Hb_000035_470--Hb_168978_030 Hb_002073_190 Hb_002073_190 Hb_000035_470--Hb_002073_190 Hb_000035_470--Hb_000976_140 Hb_019280_030 Hb_019280_030 Hb_001922_150--Hb_019280_030 Hb_001922_150--Hb_000313_220 Hb_001922_150--Hb_005730_040 Hb_004020_040 Hb_004020_040 Hb_001922_150--Hb_004020_040 Hb_007416_340 Hb_007416_340 Hb_001922_150--Hb_007416_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.04173 4.90882 7.31049 7.42952 5.09131 6.08612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19203 6.96123 3.77254 6.06164 4.74657

CAGE analysis