Hb_000331_090

Information

Type -
Description -
Location Contig331: 80558-82789
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010923mg
description hypothetical protein
nr
ID XP_007223902.1
description hypothetical protein PRUPE_ppa010923mg [Prunus persica]
swissprot
ID P93447
description Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3
trembl
ID M5XHX4
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010923mg PE=3 SV=1
Gene Ontology
ID GO:0005853
description elongation factor 1-delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34756: 80605-83415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_090 0.0 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
2 Hb_000207_150 0.0623332733 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
3 Hb_001959_110 0.0628708103 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
4 Hb_163175_010 0.0739569636 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
5 Hb_001405_210 0.0745624275 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
6 Hb_000720_040 0.0755179496 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
7 Hb_000107_230 0.0779255184 - - unknown [Medicago truncatula]
8 Hb_000086_170 0.0786825 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
9 Hb_172632_120 0.0788910054 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000096_120 0.0794151908 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
11 Hb_000731_220 0.0795130509 - - PREDICTED: derlin-2.2 [Jatropha curcas]
12 Hb_003929_170 0.0807808978 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
13 Hb_000019_190 0.0816078631 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
14 Hb_004586_060 0.0848582722 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
15 Hb_007831_010 0.0857142911 - - PREDICTED: oligoribonuclease [Vitis vinifera]
16 Hb_000962_030 0.0858091755 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
17 Hb_005460_050 0.0864991679 - - COR413-PM2, putative [Ricinus communis]
18 Hb_003528_030 0.0867953621 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
19 Hb_007062_040 0.0868942313 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
20 Hb_006588_170 0.0870220395 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_090 Hb_000331_090 Hb_000207_150 Hb_000207_150 Hb_000331_090--Hb_000207_150 Hb_001959_110 Hb_001959_110 Hb_000331_090--Hb_001959_110 Hb_163175_010 Hb_163175_010 Hb_000331_090--Hb_163175_010 Hb_001405_210 Hb_001405_210 Hb_000331_090--Hb_001405_210 Hb_000720_040 Hb_000720_040 Hb_000331_090--Hb_000720_040 Hb_000107_230 Hb_000107_230 Hb_000331_090--Hb_000107_230 Hb_000207_150--Hb_000107_230 Hb_000058_130 Hb_000058_130 Hb_000207_150--Hb_000058_130 Hb_007831_010 Hb_007831_010 Hb_000207_150--Hb_007831_010 Hb_003929_170 Hb_003929_170 Hb_000207_150--Hb_003929_170 Hb_000579_120 Hb_000579_120 Hb_000207_150--Hb_000579_120 Hb_000313_220 Hb_000313_220 Hb_001959_110--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_001959_110--Hb_000976_140 Hb_001959_110--Hb_163175_010 Hb_000035_470 Hb_000035_470 Hb_001959_110--Hb_000035_470 Hb_001922_150 Hb_001922_150 Hb_001959_110--Hb_001922_150 Hb_164390_010 Hb_164390_010 Hb_163175_010--Hb_164390_010 Hb_171900_090 Hb_171900_090 Hb_163175_010--Hb_171900_090 Hb_000365_230 Hb_000365_230 Hb_163175_010--Hb_000365_230 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170 Hb_007248_030 Hb_007248_030 Hb_001405_210--Hb_007248_030 Hb_000046_570 Hb_000046_570 Hb_001405_210--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_001405_210--Hb_007062_040 Hb_001856_180 Hb_001856_180 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_004586_060 Hb_004586_060 Hb_001405_210--Hb_004586_060 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_003994_230 Hb_003994_230 Hb_000720_040--Hb_003994_230 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_002936_010 Hb_002936_010 Hb_000720_040--Hb_002936_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230 Hb_000783_010 Hb_000783_010 Hb_000720_040--Hb_000783_010 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_000107_230--Hb_007831_010 Hb_006588_170 Hb_006588_170 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_000107_230--Hb_003929_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.3908 77.8753 128.329 150.482 70.1066 112.515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.2347 105.334 59.5919 89.0813 60.2172

CAGE analysis