Hb_007831_010

Information

Type -
Description -
Location Contig7831: 7090-19989
Sequence    

Annotation

kegg
ID vvi:100251263
description oligoribonuclease
nr
ID XP_002271328.1
description PREDICTED: oligoribonuclease [Vitis vinifera]
swissprot
ID Q9ZVE0
description Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2
trembl
ID D7T1F5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g01890 PE=4 SV=1
Gene Ontology
ID GO:0003676
description oligoribonuclease-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58020: 18128-18617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007831_010 0.0 - - PREDICTED: oligoribonuclease [Vitis vinifera]
2 Hb_006153_070 0.0588978186 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
3 Hb_003430_050 0.0643014342 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
4 Hb_000207_150 0.0676022125 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
5 Hb_015807_050 0.071569754 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
6 Hb_000107_230 0.0715904798 - - unknown [Medicago truncatula]
7 Hb_006588_170 0.0738572208 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
8 Hb_163175_010 0.0739885622 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
9 Hb_001377_310 0.0747880373 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
10 Hb_000976_140 0.0758083472 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
11 Hb_000579_120 0.0758232236 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
12 Hb_000058_130 0.0768512451 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
13 Hb_001518_080 0.0770710802 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
14 Hb_009898_050 0.0785299356 - - PREDICTED: beta-taxilin [Jatropha curcas]
15 Hb_000313_220 0.0790952545 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_000035_470 0.0792126977 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_001959_110 0.0795767363 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
18 Hb_000110_310 0.0803544524 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
19 Hb_003883_060 0.0817700904 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
20 Hb_183433_010 0.0831179667 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007831_010 Hb_007831_010 Hb_006153_070 Hb_006153_070 Hb_007831_010--Hb_006153_070 Hb_003430_050 Hb_003430_050 Hb_007831_010--Hb_003430_050 Hb_000207_150 Hb_000207_150 Hb_007831_010--Hb_000207_150 Hb_015807_050 Hb_015807_050 Hb_007831_010--Hb_015807_050 Hb_000107_230 Hb_000107_230 Hb_007831_010--Hb_000107_230 Hb_006588_170 Hb_006588_170 Hb_007831_010--Hb_006588_170 Hb_009898_050 Hb_009898_050 Hb_006153_070--Hb_009898_050 Hb_000110_310 Hb_000110_310 Hb_006153_070--Hb_000110_310 Hb_168978_030 Hb_168978_030 Hb_006153_070--Hb_168978_030 Hb_000640_170 Hb_000640_170 Hb_006153_070--Hb_000640_170 Hb_000579_120 Hb_000579_120 Hb_006153_070--Hb_000579_120 Hb_003098_070 Hb_003098_070 Hb_003430_050--Hb_003098_070 Hb_000365_230 Hb_000365_230 Hb_003430_050--Hb_000365_230 Hb_163175_010 Hb_163175_010 Hb_003430_050--Hb_163175_010 Hb_003883_060 Hb_003883_060 Hb_003430_050--Hb_003883_060 Hb_007894_150 Hb_007894_150 Hb_003430_050--Hb_007894_150 Hb_000207_150--Hb_000107_230 Hb_000058_130 Hb_000058_130 Hb_000207_150--Hb_000058_130 Hb_000331_090 Hb_000331_090 Hb_000207_150--Hb_000331_090 Hb_003929_170 Hb_003929_170 Hb_000207_150--Hb_003929_170 Hb_000207_150--Hb_000579_120 Hb_000313_220 Hb_000313_220 Hb_015807_050--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_015807_050--Hb_000976_140 Hb_109980_010 Hb_109980_010 Hb_015807_050--Hb_109980_010 Hb_000035_470 Hb_000035_470 Hb_015807_050--Hb_000035_470 Hb_002849_130 Hb_002849_130 Hb_015807_050--Hb_002849_130 Hb_000258_070 Hb_000258_070 Hb_015807_050--Hb_000258_070 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_000107_230--Hb_003929_170 Hb_105328_020 Hb_105328_020 Hb_006588_170--Hb_105328_020 Hb_013399_020 Hb_013399_020 Hb_006588_170--Hb_013399_020 Hb_000170_090 Hb_000170_090 Hb_006588_170--Hb_000170_090 Hb_000345_380 Hb_000345_380 Hb_006588_170--Hb_000345_380 Hb_001860_030 Hb_001860_030 Hb_006588_170--Hb_001860_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.62978 5.8376 12.8063 11.2299 5.95681 10.9183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.7705 8.06165 6.77852 8.37727 9.13782

CAGE analysis