Hb_000345_380

Information

Type -
Description -
Location Contig345: 336269-344238
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02220g
description POPTRDRAFT_570831; hypothetical protein
nr
ID XP_012089058.1
description PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
swissprot
ID Q8LKS5
description Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2
trembl
ID A0A067JL07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23346 PE=4 SV=1
Gene Ontology
ID GO:0003824
description long chain acyl- synthetase peroxisomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36029: 336286-344161 , PASA_asmbl_36030: 341262-343182
cDNA
(Sanger)
(ID:Location)		 039_G07r.ab1: 344850-345825

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_380 0.0 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
2 Hb_105328_020 0.0522727664 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
3 Hb_011037_030 0.0538246737 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
4 Hb_000030_190 0.0540564922 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
5 Hb_000789_310 0.0581543076 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
6 Hb_008406_200 0.0586098561 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
7 Hb_001409_020 0.0598832469 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
8 Hb_016172_020 0.0645430456 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
9 Hb_063716_100 0.0647887695 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
10 Hb_002303_070 0.0658954498 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
11 Hb_000484_030 0.0664211335 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
12 Hb_000327_270 0.0674383914 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
13 Hb_007576_110 0.0675494147 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
14 Hb_183612_040 0.0682698612 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
15 Hb_010381_090 0.069343279 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
16 Hb_008120_030 0.0695367741 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
17 Hb_000462_060 0.0697614187 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
18 Hb_000915_020 0.0705617558 - - unnamed protein product [Vitis vinifera]
19 Hb_006588_170 0.0707260559 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
20 Hb_003025_110 0.0709653499 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_380 Hb_000345_380 Hb_105328_020 Hb_105328_020 Hb_000345_380--Hb_105328_020 Hb_011037_030 Hb_011037_030 Hb_000345_380--Hb_011037_030 Hb_000030_190 Hb_000030_190 Hb_000345_380--Hb_000030_190 Hb_000789_310 Hb_000789_310 Hb_000345_380--Hb_000789_310 Hb_008406_200 Hb_008406_200 Hb_000345_380--Hb_008406_200 Hb_001409_020 Hb_001409_020 Hb_000345_380--Hb_001409_020 Hb_000170_090 Hb_000170_090 Hb_105328_020--Hb_000170_090 Hb_105328_020--Hb_011037_030 Hb_006588_170 Hb_006588_170 Hb_105328_020--Hb_006588_170 Hb_013399_020 Hb_013399_020 Hb_105328_020--Hb_013399_020 Hb_000156_010 Hb_000156_010 Hb_105328_020--Hb_000156_010 Hb_011037_030--Hb_000156_010 Hb_006455_120 Hb_006455_120 Hb_011037_030--Hb_006455_120 Hb_054865_150 Hb_054865_150 Hb_011037_030--Hb_054865_150 Hb_003750_050 Hb_003750_050 Hb_011037_030--Hb_003750_050 Hb_000030_190--Hb_000789_310 Hb_005291_030 Hb_005291_030 Hb_000030_190--Hb_005291_030 Hb_000030_190--Hb_001409_020 Hb_007576_110 Hb_007576_110 Hb_000030_190--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_000030_190--Hb_000173_490 Hb_000789_310--Hb_007576_110 Hb_033642_030 Hb_033642_030 Hb_000789_310--Hb_033642_030 Hb_000462_060 Hb_000462_060 Hb_000789_310--Hb_000462_060 Hb_000789_310--Hb_001409_020 Hb_016172_020 Hb_016172_020 Hb_008406_200--Hb_016172_020 Hb_008406_200--Hb_001409_020 Hb_005653_090 Hb_005653_090 Hb_008406_200--Hb_005653_090 Hb_000484_030 Hb_000484_030 Hb_008406_200--Hb_000484_030 Hb_000343_250 Hb_000343_250 Hb_008406_200--Hb_000343_250 Hb_010618_010 Hb_010618_010 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_001409_020--Hb_007576_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3595 10.5582 11.3041 10.7553 10.0784 15.7849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5135 9.87364 10.2742 10.8289 8.49261

CAGE analysis