Hb_016172_020

Information

Type -
Description -
Location Contig16172: 17929-19344
Sequence    

Annotation

kegg
ID rcu:RCOM_0611160
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012089399.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
swissprot
ID Q94JX6
description Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2
trembl
ID A0A067JLU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23591 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016172_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
2 Hb_008406_200 0.0500050742 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
3 Hb_008643_210 0.0545004034 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
4 Hb_004143_060 0.0546590701 - - DNA binding protein, putative [Ricinus communis]
5 Hb_010618_010 0.0561717983 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
6 Hb_001409_020 0.0583476598 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
7 Hb_001248_060 0.0597566012 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011037_030 0.0607007676 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
9 Hb_009548_020 0.0624920786 - - structural constituent of cell wall, putative [Ricinus communis]
10 Hb_165928_020 0.0636963993 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
11 Hb_000345_380 0.0645430456 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
12 Hb_004841_010 0.0651780245 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
13 Hb_000060_090 0.0663072892 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
14 Hb_011995_010 0.0686852522 - - dc50, putative [Ricinus communis]
15 Hb_000343_250 0.0696585735 - - PREDICTED: protein CASC3 [Jatropha curcas]
16 Hb_007075_040 0.0713114045 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
17 Hb_010222_050 0.0721013368 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
18 Hb_000331_260 0.07253612 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
19 Hb_105105_020 0.0729272131 - - vacuolar protein sorting vps41, putative [Ricinus communis]
20 Hb_000010_330 0.073652746 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]

Gene co-expression network

sample Hb_016172_020 Hb_016172_020 Hb_008406_200 Hb_008406_200 Hb_016172_020--Hb_008406_200 Hb_008643_210 Hb_008643_210 Hb_016172_020--Hb_008643_210 Hb_004143_060 Hb_004143_060 Hb_016172_020--Hb_004143_060 Hb_010618_010 Hb_010618_010 Hb_016172_020--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_016172_020--Hb_001409_020 Hb_001248_060 Hb_001248_060 Hb_016172_020--Hb_001248_060 Hb_008406_200--Hb_001409_020 Hb_005653_090 Hb_005653_090 Hb_008406_200--Hb_005653_090 Hb_000345_380 Hb_000345_380 Hb_008406_200--Hb_000345_380 Hb_000484_030 Hb_000484_030 Hb_008406_200--Hb_000484_030 Hb_000343_250 Hb_000343_250 Hb_008406_200--Hb_000343_250 Hb_002045_240 Hb_002045_240 Hb_008643_210--Hb_002045_240 Hb_004841_010 Hb_004841_010 Hb_008643_210--Hb_004841_010 Hb_000060_090 Hb_000060_090 Hb_008643_210--Hb_000060_090 Hb_023386_020 Hb_023386_020 Hb_008643_210--Hb_023386_020 Hb_000010_330 Hb_000010_330 Hb_008643_210--Hb_000010_330 Hb_000331_260 Hb_000331_260 Hb_004143_060--Hb_000331_260 Hb_007390_010 Hb_007390_010 Hb_004143_060--Hb_007390_010 Hb_011037_030 Hb_011037_030 Hb_004143_060--Hb_011037_030 Hb_000696_330 Hb_000696_330 Hb_004143_060--Hb_000696_330 Hb_000215_110 Hb_000215_110 Hb_004143_060--Hb_000215_110 Hb_010618_010--Hb_001248_060 Hb_010618_010--Hb_001409_020 Hb_015934_040 Hb_015934_040 Hb_010618_010--Hb_015934_040 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010 Hb_001409_020--Hb_001248_060 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_001248_060--Hb_011995_010 Hb_000289_060 Hb_000289_060 Hb_001248_060--Hb_000289_060 Hb_001248_060--Hb_015934_040 Hb_001408_040 Hb_001408_040 Hb_001248_060--Hb_001408_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03669 3.36692 3.30159 3.15437 3.62127 6.06855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.17121 3.78158 4.08577 2.96894 3.39773

CAGE analysis