Hb_002045_240

Information

Type -
Description -
Location Contig2045: 220374-222801
Sequence    

Annotation

kegg
ID rcu:RCOM_0990980
description chloroplast inner envelope protein, putative
nr
ID BAH10641.1
description 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
swissprot
ID P23525
description 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic OS=Spinacia oleracea PE=1 SV=1
trembl
ID B7X938
description 2-methyl-6-phytylbenzoquinone methyltranferase OS=Hevea brasiliensis GN=mpbqmt PE=2 SV=1
Gene Ontology
ID GO:0019031
description 2-methyl-6-phytyl- -hydroquinone chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21054: 220326-222759
cDNA
(Sanger)
(ID:Location)		 001_N23.ab1: 220468-221762 , 033_O22.ab1: 220385-221632 , 041_F22.ab1: 220326-220463 , 047_O22.ab1: 220468-221814

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002045_240 0.0 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
2 Hb_008643_210 0.0567059398 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
3 Hb_154745_010 0.0610114685 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_023386_040 0.0666951431 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
5 Hb_006252_040 0.0695574725 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
6 Hb_001097_050 0.0698439574 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_023480_010 0.0710014534 - - cellular nucleic acid binding protein, putative [Ricinus communis]
8 Hb_003680_150 0.0716635848 - - srpk, putative [Ricinus communis]
9 Hb_004881_020 0.0726509665 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
10 Hb_001638_170 0.0735801139 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
11 Hb_000484_030 0.0744610843 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
12 Hb_002823_030 0.0748021112 - - -
13 Hb_023386_020 0.0750898352 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
14 Hb_000030_190 0.0753073772 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
15 Hb_003878_070 0.0762491631 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
16 Hb_000562_090 0.0771492853 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
17 Hb_000347_180 0.077500078 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
18 Hb_033720_010 0.0781216356 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
19 Hb_002255_030 0.0781565806 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
20 Hb_000212_240 0.0782842604 - - short-chain dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002045_240 Hb_002045_240 Hb_008643_210 Hb_008643_210 Hb_002045_240--Hb_008643_210 Hb_154745_010 Hb_154745_010 Hb_002045_240--Hb_154745_010 Hb_023386_040 Hb_023386_040 Hb_002045_240--Hb_023386_040 Hb_006252_040 Hb_006252_040 Hb_002045_240--Hb_006252_040 Hb_001097_050 Hb_001097_050 Hb_002045_240--Hb_001097_050 Hb_023480_010 Hb_023480_010 Hb_002045_240--Hb_023480_010 Hb_016172_020 Hb_016172_020 Hb_008643_210--Hb_016172_020 Hb_004841_010 Hb_004841_010 Hb_008643_210--Hb_004841_010 Hb_000060_090 Hb_000060_090 Hb_008643_210--Hb_000060_090 Hb_023386_020 Hb_023386_020 Hb_008643_210--Hb_023386_020 Hb_000010_330 Hb_000010_330 Hb_008643_210--Hb_000010_330 Hb_154745_010--Hb_023386_040 Hb_000345_170 Hb_000345_170 Hb_154745_010--Hb_000345_170 Hb_020000_020 Hb_020000_020 Hb_154745_010--Hb_020000_020 Hb_001258_090 Hb_001258_090 Hb_154745_010--Hb_001258_090 Hb_110291_010 Hb_110291_010 Hb_154745_010--Hb_110291_010 Hb_000926_190 Hb_000926_190 Hb_023386_040--Hb_000926_190 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_006252_040--Hb_003952_070 Hb_000538_100 Hb_000538_100 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_004881_020 Hb_004881_020 Hb_006252_040--Hb_004881_020 Hb_000099_080 Hb_000099_080 Hb_001097_050--Hb_000099_080 Hb_000347_180 Hb_000347_180 Hb_001097_050--Hb_000347_180 Hb_001538_130 Hb_001538_130 Hb_001097_050--Hb_001538_130 Hb_002477_280 Hb_002477_280 Hb_001097_050--Hb_002477_280 Hb_000365_390 Hb_000365_390 Hb_001097_050--Hb_000365_390 Hb_003680_150 Hb_003680_150 Hb_023480_010--Hb_003680_150 Hb_000983_150 Hb_000983_150 Hb_023480_010--Hb_000983_150 Hb_000544_090 Hb_000544_090 Hb_023480_010--Hb_000544_090 Hb_002684_040 Hb_002684_040 Hb_023480_010--Hb_002684_040 Hb_003025_110 Hb_003025_110 Hb_023480_010--Hb_003025_110 Hb_000853_230 Hb_000853_230 Hb_023480_010--Hb_000853_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
159.425 112.173 70.6601 106.686 122.679 196.945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.307 119.529 88.3002 82.2025 100.673

CAGE analysis