Hb_000347_180

Information

Type -
Description -
Location Contig347: 202540-204390
Sequence    

Annotation

kegg
ID rcu:RCOM_0392160
description protein binding protein, putative
nr
ID XP_012068853.1
description PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
swissprot
ID Q9LZD3
description Exocyst complex component EXO70A1 OS=Arabidopsis thaliana GN=EXO70A1 PE=1 SV=1
trembl
ID A0A067L859
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24674 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36205: 202377-205179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_180 0.0 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
2 Hb_000457_260 0.0463018556 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
3 Hb_001097_050 0.0702776732 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_123352_020 0.0719901095 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
5 Hb_002255_030 0.0724556101 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
6 Hb_004935_030 0.0725049549 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
7 Hb_001377_270 0.0735371726 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
8 Hb_003362_070 0.0748605135 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
9 Hb_000127_040 0.074936641 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
10 Hb_004545_140 0.07533003 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
11 Hb_000365_390 0.0758646626 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
12 Hb_002716_130 0.0771232836 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
13 Hb_002045_240 0.077500078 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
14 Hb_000922_370 0.0778927887 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
15 Hb_000318_510 0.0779404244 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
16 Hb_016898_010 0.0781682586 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
17 Hb_007576_110 0.0790518395 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
18 Hb_172632_080 0.0790860057 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
19 Hb_000366_120 0.0791550365 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
20 Hb_000630_050 0.0805554524 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000347_180 Hb_000347_180 Hb_000457_260 Hb_000457_260 Hb_000347_180--Hb_000457_260 Hb_001097_050 Hb_001097_050 Hb_000347_180--Hb_001097_050 Hb_123352_020 Hb_123352_020 Hb_000347_180--Hb_123352_020 Hb_002255_030 Hb_002255_030 Hb_000347_180--Hb_002255_030 Hb_004935_030 Hb_004935_030 Hb_000347_180--Hb_004935_030 Hb_001377_270 Hb_001377_270 Hb_000347_180--Hb_001377_270 Hb_000457_260--Hb_004935_030 Hb_000457_260--Hb_123352_020 Hb_003362_070 Hb_003362_070 Hb_000457_260--Hb_003362_070 Hb_172632_080 Hb_172632_080 Hb_000457_260--Hb_172632_080 Hb_001700_040 Hb_001700_040 Hb_000457_260--Hb_001700_040 Hb_000099_080 Hb_000099_080 Hb_001097_050--Hb_000099_080 Hb_002045_240 Hb_002045_240 Hb_001097_050--Hb_002045_240 Hb_001538_130 Hb_001538_130 Hb_001097_050--Hb_001538_130 Hb_002477_280 Hb_002477_280 Hb_001097_050--Hb_002477_280 Hb_000365_390 Hb_000365_390 Hb_001097_050--Hb_000365_390 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_000487_290 Hb_000487_290 Hb_123352_020--Hb_000487_290 Hb_007163_090 Hb_007163_090 Hb_123352_020--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_005731_030 Hb_005731_030 Hb_123352_020--Hb_005731_030 Hb_000023_330 Hb_000023_330 Hb_002255_030--Hb_000023_330 Hb_063716_080 Hb_063716_080 Hb_002255_030--Hb_063716_080 Hb_003680_150 Hb_003680_150 Hb_002255_030--Hb_003680_150 Hb_002255_030--Hb_002045_240 Hb_000574_540 Hb_000574_540 Hb_002255_030--Hb_000574_540 Hb_004935_030--Hb_003362_070 Hb_000083_160 Hb_000083_160 Hb_004935_030--Hb_000083_160 Hb_003371_110 Hb_003371_110 Hb_004935_030--Hb_003371_110 Hb_001617_060 Hb_001617_060 Hb_004935_030--Hb_001617_060 Hb_007576_110 Hb_007576_110 Hb_004935_030--Hb_007576_110 Hb_000080_150 Hb_000080_150 Hb_001377_270--Hb_000080_150 Hb_005269_040 Hb_005269_040 Hb_001377_270--Hb_005269_040 Hb_001377_270--Hb_001538_130 Hb_000608_320 Hb_000608_320 Hb_001377_270--Hb_000608_320 Hb_000366_120 Hb_000366_120 Hb_001377_270--Hb_000366_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5375 20.7169 7.70274 20.4087 20.0828 30.5325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4511 14.5949 18.7159 17.3559 14.2427

CAGE analysis