Hb_000023_330

Information

Type -
Description -
Location Contig23: 533530-553338
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28150g
description POPTRDRAFT_819630; RNA recognition motif-containing family protein
nr
ID XP_002308714.1
description RNA recognition motif-containing family protein [Populus trichocarpa]
swissprot
ID Q6NV83
description U2 snRNP-associated SURP motif-containing protein OS=Mus musculus GN=U2surp PE=2 SV=3
trembl
ID B9HB72
description RNA recognition motif-containing family protein OS=Populus trichocarpa GN=POPTR_0006s28150g PE=4 SV=1
Gene Ontology
ID GO:0000166
description u2 snrnp-associated surp motif-containing protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23969: 534052-535216 , PASA_asmbl_23970: 542574-553364
cDNA
(Sanger)
(ID:Location)		 042_F04.ab1: 542574-553356

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_330 0.0 - - RNA recognition motif-containing family protein [Populus trichocarpa]
2 Hb_002255_030 0.0580406286 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
3 Hb_003680_150 0.0727757822 - - srpk, putative [Ricinus communis]
4 Hb_004954_070 0.0751214455 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
5 Hb_023386_040 0.0751531083 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
6 Hb_016898_010 0.0755931607 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
7 Hb_009486_180 0.0782189019 - - unknown [Glycine max]
8 Hb_001178_070 0.0794422137 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
9 Hb_003362_070 0.0818781193 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_002007_020 0.0822954283 - - PREDICTED: ATP-dependent DNA helicase Q-like SIM [Jatropha curcas]
11 Hb_000190_120 0.0825593848 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
12 Hb_001638_270 0.0826162141 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
13 Hb_003952_150 0.0830624529 - - PREDICTED: cactin [Jatropha curcas]
14 Hb_003878_070 0.0833260695 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
15 Hb_017862_020 0.0840625832 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
16 Hb_104061_020 0.0841445103 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
17 Hb_000300_440 0.0842294529 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
18 Hb_048476_180 0.0849354544 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
19 Hb_000225_040 0.0849373025 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
20 Hb_002823_030 0.0853032873 - - -

Gene co-expression network

sample Hb_000023_330 Hb_000023_330 Hb_002255_030 Hb_002255_030 Hb_000023_330--Hb_002255_030 Hb_003680_150 Hb_003680_150 Hb_000023_330--Hb_003680_150 Hb_004954_070 Hb_004954_070 Hb_000023_330--Hb_004954_070 Hb_023386_040 Hb_023386_040 Hb_000023_330--Hb_023386_040 Hb_016898_010 Hb_016898_010 Hb_000023_330--Hb_016898_010 Hb_009486_180 Hb_009486_180 Hb_000023_330--Hb_009486_180 Hb_063716_080 Hb_063716_080 Hb_002255_030--Hb_063716_080 Hb_002255_030--Hb_003680_150 Hb_000347_180 Hb_000347_180 Hb_002255_030--Hb_000347_180 Hb_002045_240 Hb_002045_240 Hb_002255_030--Hb_002045_240 Hb_000574_540 Hb_000574_540 Hb_002255_030--Hb_000574_540 Hb_002823_030 Hb_002823_030 Hb_003680_150--Hb_002823_030 Hb_007576_110 Hb_007576_110 Hb_003680_150--Hb_007576_110 Hb_014361_070 Hb_014361_070 Hb_003680_150--Hb_014361_070 Hb_000853_230 Hb_000853_230 Hb_003680_150--Hb_000853_230 Hb_023480_010 Hb_023480_010 Hb_003680_150--Hb_023480_010 Hb_000484_030 Hb_000484_030 Hb_003680_150--Hb_000484_030 Hb_007575_050 Hb_007575_050 Hb_004954_070--Hb_007575_050 Hb_000011_230 Hb_000011_230 Hb_004954_070--Hb_000011_230 Hb_017862_020 Hb_017862_020 Hb_004954_070--Hb_017862_020 Hb_004410_030 Hb_004410_030 Hb_004954_070--Hb_004410_030 Hb_000225_040 Hb_000225_040 Hb_004954_070--Hb_000225_040 Hb_031284_040 Hb_031284_040 Hb_004954_070--Hb_031284_040 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_000926_190 Hb_000926_190 Hb_023386_040--Hb_000926_190 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_003362_070 Hb_003362_070 Hb_016898_010--Hb_003362_070 Hb_000084_120 Hb_000084_120 Hb_016898_010--Hb_000084_120 Hb_000101_240 Hb_000101_240 Hb_016898_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_016898_010--Hb_048476_180 Hb_003428_070 Hb_003428_070 Hb_016898_010--Hb_003428_070 Hb_003952_150 Hb_003952_150 Hb_016898_010--Hb_003952_150 Hb_009175_020 Hb_009175_020 Hb_009486_180--Hb_009175_020 Hb_001178_070 Hb_001178_070 Hb_009486_180--Hb_001178_070 Hb_000900_030 Hb_000900_030 Hb_009486_180--Hb_000900_030 Hb_009486_180--Hb_000011_230 Hb_002311_290 Hb_002311_290 Hb_009486_180--Hb_002311_290 Hb_001062_010 Hb_001062_010 Hb_009486_180--Hb_001062_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.026 12.2535 5.62196 7.20369 12.1344 16.1194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9698 9.59408 6.47763 14.4734 8.65401

CAGE analysis