Hb_000011_230

Information

Type -
Description -
Location Contig11: 293617-295615
Sequence    

Annotation

kegg
ID rcu:RCOM_0333230
description methylenetetrahydrofolate dehydrogenase, putative (EC:3.5.4.9)
nr
ID XP_012068784.1
description PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
swissprot
ID O65271
description Bifunctional protein FolD 4, chloroplastic OS=Arabidopsis thaliana GN=FOLD4 PE=2 SV=1
trembl
ID A0A067L7Z6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24619 PE=3 SV=1
Gene Ontology
ID GO:0004477
description bifunctional protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02988: 293834-295888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_230 0.0 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
2 Hb_000190_120 0.0638551961 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
3 Hb_009486_180 0.068176562 - - unknown [Glycine max]
4 Hb_004954_070 0.0688766869 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
5 Hb_009175_020 0.0709560761 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
6 Hb_004412_010 0.0713982071 - - -
7 Hb_000084_120 0.0717354271 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
8 Hb_000343_120 0.0757350694 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
9 Hb_001178_070 0.0761750464 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
10 Hb_000900_030 0.0782829834 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
11 Hb_009545_100 0.0800143254 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
12 Hb_000193_190 0.0816339532 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
13 Hb_016898_010 0.0821148725 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
14 Hb_001104_160 0.0824603057 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
15 Hb_000166_130 0.0825150457 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004235_080 0.0827986201 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
17 Hb_001195_320 0.082821532 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
18 Hb_000205_100 0.0832297196 - - PREDICTED: exportin-4 [Jatropha curcas]
19 Hb_003029_110 0.084125713 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
20 Hb_003952_150 0.0842001173 - - PREDICTED: cactin [Jatropha curcas]

Gene co-expression network

sample Hb_000011_230 Hb_000011_230 Hb_000190_120 Hb_000190_120 Hb_000011_230--Hb_000190_120 Hb_009486_180 Hb_009486_180 Hb_000011_230--Hb_009486_180 Hb_004954_070 Hb_004954_070 Hb_000011_230--Hb_004954_070 Hb_009175_020 Hb_009175_020 Hb_000011_230--Hb_009175_020 Hb_004412_010 Hb_004412_010 Hb_000011_230--Hb_004412_010 Hb_000084_120 Hb_000084_120 Hb_000011_230--Hb_000084_120 Hb_007576_110 Hb_007576_110 Hb_000190_120--Hb_007576_110 Hb_002823_030 Hb_002823_030 Hb_000190_120--Hb_002823_030 Hb_003371_110 Hb_003371_110 Hb_000190_120--Hb_003371_110 Hb_000347_070 Hb_000347_070 Hb_000190_120--Hb_000347_070 Hb_000190_120--Hb_009175_020 Hb_003680_150 Hb_003680_150 Hb_000190_120--Hb_003680_150 Hb_009486_180--Hb_009175_020 Hb_001178_070 Hb_001178_070 Hb_009486_180--Hb_001178_070 Hb_000900_030 Hb_000900_030 Hb_009486_180--Hb_000900_030 Hb_002311_290 Hb_002311_290 Hb_009486_180--Hb_002311_290 Hb_001062_010 Hb_001062_010 Hb_009486_180--Hb_001062_010 Hb_007575_050 Hb_007575_050 Hb_004954_070--Hb_007575_050 Hb_017862_020 Hb_017862_020 Hb_004954_070--Hb_017862_020 Hb_004410_030 Hb_004410_030 Hb_004954_070--Hb_004410_030 Hb_000225_040 Hb_000225_040 Hb_004954_070--Hb_000225_040 Hb_031284_040 Hb_031284_040 Hb_004954_070--Hb_031284_040 Hb_002329_040 Hb_002329_040 Hb_009175_020--Hb_002329_040 Hb_000429_220 Hb_000429_220 Hb_009175_020--Hb_000429_220 Hb_123903_010 Hb_123903_010 Hb_009175_020--Hb_123903_010 Hb_002107_070 Hb_002107_070 Hb_009175_020--Hb_002107_070 Hb_004412_010--Hb_007575_050 Hb_023386_020 Hb_023386_020 Hb_004412_010--Hb_023386_020 Hb_003878_070 Hb_003878_070 Hb_004412_010--Hb_003878_070 Hb_165928_020 Hb_165928_020 Hb_004412_010--Hb_165928_020 Hb_016898_010 Hb_016898_010 Hb_004412_010--Hb_016898_010 Hb_023386_040 Hb_023386_040 Hb_004412_010--Hb_023386_040 Hb_000084_120--Hb_016898_010 Hb_003362_070 Hb_003362_070 Hb_000084_120--Hb_003362_070 Hb_003952_150 Hb_003952_150 Hb_000084_120--Hb_003952_150 Hb_004602_040 Hb_004602_040 Hb_000084_120--Hb_004602_040 Hb_000101_240 Hb_000101_240 Hb_000084_120--Hb_000101_240 Hb_003428_070 Hb_003428_070 Hb_000084_120--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.39174 8.54696 4.38352 5.64578 12.4264 11.7954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.54769 8.55556 5.43401 10.1629 6.65216

CAGE analysis