Hb_004412_010

Information

Type -
Description -
Location Contig4412: 17451-25498
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42681: 17626-21901 , PASA_asmbl_42682: 17739-18777 , PASA_asmbl_42683: 18991-19621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004412_010 0.0 - - -
2 Hb_007575_050 0.0623856732 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
3 Hb_023386_020 0.0665723298 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
4 Hb_003878_070 0.0667809922 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
5 Hb_165928_020 0.0679981263 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
6 Hb_016898_010 0.0684954117 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
7 Hb_023386_040 0.0686868181 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
8 Hb_000926_190 0.0689924185 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
9 Hb_002823_030 0.0713742453 - - -
10 Hb_000011_230 0.0713982071 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
11 Hb_004100_080 0.0715201914 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002518_280 0.0733644392 - - phosphate transporter [Manihot esculenta]
13 Hb_003025_110 0.073702115 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
14 Hb_110291_010 0.0743259297 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000120_920 0.0756865201 - - poly(A) polymerase, putative [Ricinus communis]
16 Hb_000856_110 0.0760371859 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
17 Hb_000062_430 0.0763979881 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
18 Hb_000190_120 0.0770009229 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
19 Hb_010222_050 0.0785501112 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
20 Hb_003029_110 0.08003703 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004412_010 Hb_004412_010 Hb_007575_050 Hb_007575_050 Hb_004412_010--Hb_007575_050 Hb_023386_020 Hb_023386_020 Hb_004412_010--Hb_023386_020 Hb_003878_070 Hb_003878_070 Hb_004412_010--Hb_003878_070 Hb_165928_020 Hb_165928_020 Hb_004412_010--Hb_165928_020 Hb_016898_010 Hb_016898_010 Hb_004412_010--Hb_016898_010 Hb_023386_040 Hb_023386_040 Hb_004412_010--Hb_023386_040 Hb_007575_050--Hb_003878_070 Hb_000225_040 Hb_000225_040 Hb_007575_050--Hb_000225_040 Hb_004954_070 Hb_004954_070 Hb_007575_050--Hb_004954_070 Hb_003025_110 Hb_003025_110 Hb_007575_050--Hb_003025_110 Hb_002518_280 Hb_002518_280 Hb_007575_050--Hb_002518_280 Hb_004100_080 Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_000879_200 Hb_000879_200 Hb_023386_020--Hb_000879_200 Hb_000334_280 Hb_000334_280 Hb_003878_070--Hb_000334_280 Hb_110291_010 Hb_110291_010 Hb_003878_070--Hb_110291_010 Hb_007054_060 Hb_007054_060 Hb_003878_070--Hb_007054_060 Hb_003525_010 Hb_003525_010 Hb_003878_070--Hb_003525_010 Hb_003125_120 Hb_003125_120 Hb_003878_070--Hb_003125_120 Hb_000120_920 Hb_000120_920 Hb_165928_020--Hb_000120_920 Hb_004841_010 Hb_004841_010 Hb_165928_020--Hb_004841_010 Hb_165928_020--Hb_023386_020 Hb_016172_020 Hb_016172_020 Hb_165928_020--Hb_016172_020 Hb_000062_430 Hb_000062_430 Hb_165928_020--Hb_000062_430 Hb_003362_070 Hb_003362_070 Hb_016898_010--Hb_003362_070 Hb_000084_120 Hb_000084_120 Hb_016898_010--Hb_000084_120 Hb_000101_240 Hb_000101_240 Hb_016898_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_016898_010--Hb_048476_180 Hb_003428_070 Hb_003428_070 Hb_016898_010--Hb_003428_070 Hb_003952_150 Hb_003952_150 Hb_016898_010--Hb_003952_150 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_023386_040--Hb_000926_190 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.74195 8.64062 6.31135 6.60454 12.845 16.7358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.36045 11.5302 6.75264 9.32404 9.85006

CAGE analysis