Hb_000062_430

Information

Type -
Description -
Location Contig62: 323791-325671
Sequence    

Annotation

kegg
ID rcu:RCOM_1081720
description hypothetical protein
nr
ID XP_012085617.1
description PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID A0A067JSB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17915 PE=4 SV=1
Gene Ontology
ID GO:0005634
description remorin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_430 0.0 - - PREDICTED: uncharacterized protein LOC105644764 isoform X1 [Jatropha curcas]
2 Hb_002737_070 0.0561051146 - - PREDICTED: phagocyte signaling-impaired protein [Jatropha curcas]
3 Hb_165928_020 0.0700106285 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
4 Hb_000120_920 0.0733786619 - - poly(A) polymerase, putative [Ricinus communis]
5 Hb_004412_010 0.0763979881 - - -
6 Hb_004841_010 0.0843063682 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
7 Hb_000093_160 0.0866838323 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
8 Hb_033153_070 0.0920309959 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
9 Hb_110291_010 0.0927655653 - - conserved hypothetical protein [Ricinus communis]
10 Hb_023386_040 0.0939544126 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
11 Hb_023386_020 0.0950000068 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
12 Hb_006909_070 0.0974883874 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000856_110 0.0975205945 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
14 Hb_002045_240 0.0976297765 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
15 Hb_154745_010 0.0982482161 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_024847_010 0.0985672359 - - UPF0586 C9orf41-like protein [Medicago truncatula]
17 Hb_000367_130 0.099151082 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008643_210 0.0995977689 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
19 Hb_003665_060 0.1009541958 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
20 Hb_000189_340 0.1012792817 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_430 Hb_000062_430 Hb_002737_070 Hb_002737_070 Hb_000062_430--Hb_002737_070 Hb_165928_020 Hb_165928_020 Hb_000062_430--Hb_165928_020 Hb_000120_920 Hb_000120_920 Hb_000062_430--Hb_000120_920 Hb_004412_010 Hb_004412_010 Hb_000062_430--Hb_004412_010 Hb_004841_010 Hb_004841_010 Hb_000062_430--Hb_004841_010 Hb_000093_160 Hb_000093_160 Hb_000062_430--Hb_000093_160 Hb_002737_070--Hb_000120_920 Hb_002737_070--Hb_165928_020 Hb_013691_020 Hb_013691_020 Hb_002737_070--Hb_013691_020 Hb_000009_650 Hb_000009_650 Hb_002737_070--Hb_000009_650 Hb_000785_080 Hb_000785_080 Hb_002737_070--Hb_000785_080 Hb_165928_020--Hb_000120_920 Hb_165928_020--Hb_004841_010 Hb_023386_020 Hb_023386_020 Hb_165928_020--Hb_023386_020 Hb_016172_020 Hb_016172_020 Hb_165928_020--Hb_016172_020 Hb_165928_020--Hb_004412_010 Hb_023386_040 Hb_023386_040 Hb_000120_920--Hb_023386_040 Hb_000120_920--Hb_004412_010 Hb_003438_050 Hb_003438_050 Hb_000120_920--Hb_003438_050 Hb_003025_110 Hb_003025_110 Hb_000120_920--Hb_003025_110 Hb_007575_050 Hb_007575_050 Hb_004412_010--Hb_007575_050 Hb_004412_010--Hb_023386_020 Hb_003878_070 Hb_003878_070 Hb_004412_010--Hb_003878_070 Hb_016898_010 Hb_016898_010 Hb_004412_010--Hb_016898_010 Hb_004412_010--Hb_023386_040 Hb_004841_010--Hb_023386_020 Hb_008643_210 Hb_008643_210 Hb_004841_010--Hb_008643_210 Hb_004841_010--Hb_016172_020 Hb_000856_110 Hb_000856_110 Hb_004841_010--Hb_000856_110 Hb_004100_080 Hb_004100_080 Hb_004841_010--Hb_004100_080 Hb_003010_030 Hb_003010_030 Hb_000093_160--Hb_003010_030 Hb_003428_030 Hb_003428_030 Hb_000093_160--Hb_003428_030 Hb_096563_010 Hb_096563_010 Hb_000093_160--Hb_096563_010 Hb_004310_150 Hb_004310_150 Hb_000093_160--Hb_004310_150 Hb_000120_790 Hb_000120_790 Hb_000093_160--Hb_000120_790 Hb_001258_090 Hb_001258_090 Hb_000093_160--Hb_001258_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.785096 0.499821 0.543575 0.572186 0.811512 1.4795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.553014 0.97869 0.402243 0.48019 0.670892

CAGE analysis