Hb_001258_090

Information

Type -
Description -
Location Contig1258: 89635-95969
Sequence    

Annotation

kegg
ID rcu:RCOM_0188240
description hypothetical protein
nr
ID XP_012079508.1
description PREDICTED: protein spt2-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIR3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12611 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07887: 89689-92421 , PASA_asmbl_07888: 91169-92421 , PASA_asmbl_07889: 93262-95921 , PASA_asmbl_07890: 94295-95921 , PASA_asmbl_07891: 93078-94969 , PASA_asmbl_07893: 93926-94945
cDNA
(Sanger)
(ID:Location)		 053_K10.ab1: 89691-92421

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_090 0.0 - - PREDICTED: protein spt2-like [Jatropha curcas]
2 Hb_003010_030 0.0594228565 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
3 Hb_001595_030 0.0613826833 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
4 Hb_000093_160 0.0626602621 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
5 Hb_000038_170 0.0633771553 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
6 Hb_023386_020 0.0637813098 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
7 Hb_007054_060 0.0637910563 - - -
8 Hb_000879_200 0.0638921726 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
9 Hb_156973_010 0.0641028184 - - conserved hypothetical protein [Ricinus communis]
10 Hb_036790_100 0.0660159845 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
11 Hb_096563_010 0.0683592952 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
12 Hb_002603_120 0.0694288737 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
13 Hb_000926_190 0.0703665626 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
14 Hb_000210_180 0.0707987462 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_000403_050 0.0711252142 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
16 Hb_003878_070 0.0715238793 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
17 Hb_007632_030 0.0716578012 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
18 Hb_001006_140 0.07177925 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
19 Hb_023386_040 0.0733767453 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
20 Hb_000853_420 0.0736269879 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001258_090 Hb_001258_090 Hb_003010_030 Hb_003010_030 Hb_001258_090--Hb_003010_030 Hb_001595_030 Hb_001595_030 Hb_001258_090--Hb_001595_030 Hb_000093_160 Hb_000093_160 Hb_001258_090--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_001258_090--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_001258_090--Hb_023386_020 Hb_007054_060 Hb_007054_060 Hb_001258_090--Hb_007054_060 Hb_003010_030--Hb_000093_160 Hb_096563_010 Hb_096563_010 Hb_003010_030--Hb_096563_010 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_000120_790 Hb_000120_790 Hb_003010_030--Hb_000120_790 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220 Hb_000879_200 Hb_000879_200 Hb_001595_030--Hb_000879_200 Hb_036790_100 Hb_036790_100 Hb_001595_030--Hb_036790_100 Hb_001595_030--Hb_000038_170 Hb_000327_120 Hb_000327_120 Hb_001595_030--Hb_000327_120 Hb_002603_120 Hb_002603_120 Hb_001595_030--Hb_002603_120 Hb_006185_050 Hb_006185_050 Hb_001595_030--Hb_006185_050 Hb_003428_030 Hb_003428_030 Hb_000093_160--Hb_003428_030 Hb_000093_160--Hb_096563_010 Hb_004310_150 Hb_004310_150 Hb_000093_160--Hb_004310_150 Hb_000093_160--Hb_000120_790 Hb_002518_280 Hb_002518_280 Hb_000038_170--Hb_002518_280 Hb_011671_430 Hb_011671_430 Hb_000038_170--Hb_011671_430 Hb_000038_170--Hb_003428_030 Hb_000038_170--Hb_000879_200 Hb_001006_140 Hb_001006_140 Hb_000038_170--Hb_001006_140 Hb_004100_080 Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_023386_020--Hb_000879_200 Hb_003878_070 Hb_003878_070 Hb_007054_060--Hb_003878_070 Hb_007054_060--Hb_000926_190 Hb_023386_040 Hb_023386_040 Hb_007054_060--Hb_023386_040 Hb_000179_030 Hb_000179_030 Hb_007054_060--Hb_000179_030 Hb_007054_060--Hb_023386_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.081 26.2788 21.8897 15.6884 32.7559 46.6108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.6174 40.5587 26.3389 20.5096 22.3984

CAGE analysis