Hb_012008_020

Information

Type -
Description -
Location Contig12008: 4744-5370
Sequence    

Annotation

kegg
ID sly:101256184
description uncharacterized LOC101256184
nr
ID XP_009784894.1
description PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
swissprot
ID P20892
description Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
trembl
ID A5BWN3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018026 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104233229

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06247: 4142-6407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012008_020 0.0 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
2 Hb_003010_030 0.0591865027 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
3 Hb_001358_030 0.0600441422 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
4 Hb_009557_070 0.0689956621 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000959_260 0.0709375922 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
6 Hb_002660_080 0.071583925 - - 60S ribosomal protein L12A [Hevea brasiliensis]
7 Hb_002391_300 0.0734181324 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
8 Hb_002659_070 0.0745823306 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
9 Hb_096563_010 0.0748059289 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
10 Hb_114343_010 0.0760057709 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
11 Hb_004128_190 0.0761196836 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
12 Hb_000093_160 0.0763415165 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
13 Hb_004440_050 0.077926262 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
14 Hb_000349_060 0.080101532 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
15 Hb_000103_560 0.0808734988 - - ADP-ribosylation factor, putative [Ricinus communis]
16 Hb_000089_220 0.0812784995 - - PREDICTED: protein FAM133-like [Populus euphratica]
17 Hb_144598_030 0.0814012273 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
18 Hb_005333_070 0.0814388196 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010691_060 0.0819244718 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
20 Hb_000243_030 0.0820912654 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]

Gene co-expression network

sample Hb_012008_020 Hb_012008_020 Hb_003010_030 Hb_003010_030 Hb_012008_020--Hb_003010_030 Hb_001358_030 Hb_001358_030 Hb_012008_020--Hb_001358_030 Hb_009557_070 Hb_009557_070 Hb_012008_020--Hb_009557_070 Hb_000959_260 Hb_000959_260 Hb_012008_020--Hb_000959_260 Hb_002660_080 Hb_002660_080 Hb_012008_020--Hb_002660_080 Hb_002391_300 Hb_002391_300 Hb_012008_020--Hb_002391_300 Hb_000093_160 Hb_000093_160 Hb_003010_030--Hb_000093_160 Hb_096563_010 Hb_096563_010 Hb_003010_030--Hb_096563_010 Hb_001258_090 Hb_001258_090 Hb_003010_030--Hb_001258_090 Hb_000120_790 Hb_000120_790 Hb_003010_030--Hb_000120_790 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_001358_030--Hb_096563_010 Hb_001358_030--Hb_002660_080 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_000329_030 Hb_000329_030 Hb_009557_070--Hb_000329_030 Hb_000045_090 Hb_000045_090 Hb_009557_070--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_009557_070--Hb_143398_010 Hb_007416_280 Hb_007416_280 Hb_009557_070--Hb_007416_280 Hb_003175_010 Hb_003175_010 Hb_009557_070--Hb_003175_010 Hb_003929_250 Hb_003929_250 Hb_009557_070--Hb_003929_250 Hb_010504_020 Hb_010504_020 Hb_000959_260--Hb_010504_020 Hb_002835_080 Hb_002835_080 Hb_000959_260--Hb_002835_080 Hb_148644_010 Hb_148644_010 Hb_000959_260--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_000959_260--Hb_001489_150 Hb_002477_330 Hb_002477_330 Hb_000959_260--Hb_002477_330 Hb_002660_080--Hb_096563_010 Hb_000056_200 Hb_000056_200 Hb_002660_080--Hb_000056_200 Hb_001226_160 Hb_001226_160 Hb_002660_080--Hb_001226_160 Hb_002226_070 Hb_002226_070 Hb_002660_080--Hb_002226_070 Hb_001489_060 Hb_001489_060 Hb_002660_080--Hb_001489_060 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_003406_010 Hb_003406_010 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_007218_080 Hb_007218_080 Hb_002391_300--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1981 6.96414 6.26354 9.3848 14.4292 23.7617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.385 20.8276 10.0803 7.02892 6.66692

CAGE analysis