Hb_000959_260

Information

Type -
Description -
Location Contig959: 228585-233635
Sequence    

Annotation

kegg
ID rcu:RCOM_0157900
description hypothetical protein
nr
ID XP_012075290.1
description PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
swissprot
ID Q99JH1
description Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1
trembl
ID A0A067KSQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09459 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease p protein subunit p25-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63663: 231191-233681 , PASA_asmbl_63664: 231143-233681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_260 0.0 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
2 Hb_010504_020 0.0633888658 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
3 Hb_002835_080 0.0646287057 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
4 Hb_012008_020 0.0709375922 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
5 Hb_148644_010 0.0711842216 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
6 Hb_001489_150 0.074078689 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
7 Hb_002477_330 0.0755932184 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
8 Hb_020956_020 0.0766736008 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
9 Hb_118707_030 0.0766946409 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
10 Hb_009557_070 0.07705581 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003010_030 0.0783565773 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
12 Hb_005305_080 0.0785916088 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
13 Hb_000243_030 0.0811927351 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
14 Hb_004128_190 0.0821962118 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
15 Hb_001638_170 0.0836424784 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
16 Hb_143398_010 0.0839183953 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
17 Hb_000510_130 0.0840952709 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
18 Hb_002762_120 0.0844863701 - - PREDICTED: uncharacterized protein LOC105640350 isoform X1 [Jatropha curcas]
19 Hb_001258_090 0.0847797869 - - PREDICTED: protein spt2-like [Jatropha curcas]
20 Hb_001006_140 0.0850286488 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000959_260 Hb_000959_260 Hb_010504_020 Hb_010504_020 Hb_000959_260--Hb_010504_020 Hb_002835_080 Hb_002835_080 Hb_000959_260--Hb_002835_080 Hb_012008_020 Hb_012008_020 Hb_000959_260--Hb_012008_020 Hb_148644_010 Hb_148644_010 Hb_000959_260--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_000959_260--Hb_001489_150 Hb_002477_330 Hb_002477_330 Hb_000959_260--Hb_002477_330 Hb_005305_080 Hb_005305_080 Hb_010504_020--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_010504_020--Hb_000510_130 Hb_020956_020 Hb_020956_020 Hb_010504_020--Hb_020956_020 Hb_010504_020--Hb_002477_330 Hb_159809_020 Hb_159809_020 Hb_010504_020--Hb_159809_020 Hb_019280_040 Hb_019280_040 Hb_002835_080--Hb_019280_040 Hb_002835_080--Hb_148644_010 Hb_002182_080 Hb_002182_080 Hb_002835_080--Hb_002182_080 Hb_000010_330 Hb_000010_330 Hb_002835_080--Hb_000010_330 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_012008_020--Hb_003010_030 Hb_001358_030 Hb_001358_030 Hb_012008_020--Hb_001358_030 Hb_009557_070 Hb_009557_070 Hb_012008_020--Hb_009557_070 Hb_002660_080 Hb_002660_080 Hb_012008_020--Hb_002660_080 Hb_002391_300 Hb_002391_300 Hb_012008_020--Hb_002391_300 Hb_000700_110 Hb_000700_110 Hb_148644_010--Hb_000700_110 Hb_004032_150 Hb_004032_150 Hb_148644_010--Hb_004032_150 Hb_148644_010--Hb_002477_330 Hb_000035_320 Hb_000035_320 Hb_148644_010--Hb_000035_320 Hb_003195_070 Hb_003195_070 Hb_148644_010--Hb_003195_070 Hb_005291_030 Hb_005291_030 Hb_001489_150--Hb_005291_030 Hb_003952_070 Hb_003952_070 Hb_001489_150--Hb_003952_070 Hb_001489_150--Hb_004032_150 Hb_000808_270 Hb_000808_270 Hb_001489_150--Hb_000808_270 Hb_007416_280 Hb_007416_280 Hb_001489_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_001489_150--Hb_001638_170 Hb_000103_090 Hb_000103_090 Hb_002477_330--Hb_000103_090 Hb_004128_190 Hb_004128_190 Hb_002477_330--Hb_004128_190 Hb_000045_090 Hb_000045_090 Hb_002477_330--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_002477_330--Hb_143398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.38175 5.44701 3.97762 5.51019 7.41651 15.276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0353 12.0794 8.49584 5.34253 5.87634

CAGE analysis