Hb_000700_110

Information

Type -
Description -
Location Contig700: 185257-189943
Sequence    

Annotation

kegg
ID rcu:RCOM_1721240
description Vesicle-associated membrane protein, putative
nr
ID XP_002521112.1
description Vesicle-associated membrane protein, putative [Ricinus communis]
swissprot
ID Q9MAS5
description Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=3 SV=2
trembl
ID B9S543
description Vesicle-associated membrane protein, putative OS=Ricinus communis GN=RCOM_1721240 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 722

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54799: 185362-189964 , PASA_asmbl_54800: 189023-189343 , PASA_asmbl_54802: 187642-187775
cDNA
(Sanger)
(ID:Location)		 009_E08.ab1: 189700-189888 , 045_C14.ab1: 185608-189936 , 048_L17.ab1: 185577-189936

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000700_110 0.0 - - Vesicle-associated membrane protein, putative [Ricinus communis]
2 Hb_148644_010 0.0610155113 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_003092_030 0.0616608906 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
4 Hb_000041_050 0.0628096863 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
5 Hb_000347_200 0.0672204944 - - lsm1, putative [Ricinus communis]
6 Hb_006198_080 0.0715768001 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
7 Hb_002477_330 0.0730661157 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
8 Hb_000656_110 0.0808143291 - - nucleolysin tia-1, putative [Ricinus communis]
9 Hb_003847_080 0.0826426154 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
10 Hb_000207_250 0.0827546644 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
11 Hb_001344_010 0.0837247832 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
12 Hb_010504_020 0.0846800157 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
13 Hb_004705_100 0.0846976109 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
14 Hb_004724_420 0.084759216 - - fucose synthetase, putative [Ricinus communis]
15 Hb_000173_340 0.0849729243 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
16 Hb_000976_410 0.085529319 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
17 Hb_002811_360 0.087818539 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
18 Hb_183086_060 0.0878704035 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
19 Hb_000045_090 0.0880449415 - - PREDICTED: syntaxin-31 [Jatropha curcas]
20 Hb_004976_030 0.0889955498 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]

Gene co-expression network

sample Hb_000700_110 Hb_000700_110 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_003092_030 Hb_003092_030 Hb_000700_110--Hb_003092_030 Hb_000041_050 Hb_000041_050 Hb_000700_110--Hb_000041_050 Hb_000347_200 Hb_000347_200 Hb_000700_110--Hb_000347_200 Hb_006198_080 Hb_006198_080 Hb_000700_110--Hb_006198_080 Hb_002477_330 Hb_002477_330 Hb_000700_110--Hb_002477_330 Hb_002835_080 Hb_002835_080 Hb_148644_010--Hb_002835_080 Hb_004032_150 Hb_004032_150 Hb_148644_010--Hb_004032_150 Hb_148644_010--Hb_002477_330 Hb_000035_320 Hb_000035_320 Hb_148644_010--Hb_000035_320 Hb_003195_070 Hb_003195_070 Hb_148644_010--Hb_003195_070 Hb_003092_030--Hb_006198_080 Hb_021238_050 Hb_021238_050 Hb_003092_030--Hb_021238_050 Hb_037887_010 Hb_037887_010 Hb_003092_030--Hb_037887_010 Hb_000898_050 Hb_000898_050 Hb_003092_030--Hb_000898_050 Hb_006429_010 Hb_006429_010 Hb_003092_030--Hb_006429_010 Hb_000656_110 Hb_000656_110 Hb_000041_050--Hb_000656_110 Hb_007441_120 Hb_007441_120 Hb_000041_050--Hb_007441_120 Hb_001833_110 Hb_001833_110 Hb_000041_050--Hb_001833_110 Hb_002759_060 Hb_002759_060 Hb_000041_050--Hb_002759_060 Hb_000041_050--Hb_002477_330 Hb_000173_340 Hb_000173_340 Hb_000347_200--Hb_000173_340 Hb_000347_200--Hb_006198_080 Hb_000347_200--Hb_003092_030 Hb_012305_050 Hb_012305_050 Hb_000347_200--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_000347_200--Hb_000024_080 Hb_006198_080--Hb_037887_010 Hb_000107_310 Hb_000107_310 Hb_006198_080--Hb_000107_310 Hb_006198_080--Hb_021238_050 Hb_010504_020 Hb_010504_020 Hb_002477_330--Hb_010504_020 Hb_000103_090 Hb_000103_090 Hb_002477_330--Hb_000103_090 Hb_004128_190 Hb_004128_190 Hb_002477_330--Hb_004128_190 Hb_000045_090 Hb_000045_090 Hb_002477_330--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_002477_330--Hb_143398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
344.931 207.36 89.3169 358.401 330.66 639.812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
535.077 432.082 568.52 253.033 171.085

CAGE analysis