Hb_003195_070

Information

Type -
Description -
Location Contig3195: 106877-113735
Sequence    

Annotation

kegg
ID tcc:TCM_006467
description Uncharacterized protein isoform 1
nr
ID XP_007041634.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID F4JTN2
description Protein LAZ1 OS=Arabidopsis thaliana GN=LAZ1 PE=1 SV=1
trembl
ID A0A061DXN2
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_006467 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 184 homolog ddb_g0279555-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33662: 81433-113766 , PASA_asmbl_33663: 81433-113766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003195_070 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_002506_020 0.0592182025 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
3 Hb_000010_330 0.0609672969 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
4 Hb_007904_200 0.063423814 - - protein binding protein, putative [Ricinus communis]
5 Hb_048937_040 0.0650139452 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
6 Hb_004109_090 0.0669635449 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_002200_080 0.0674024856 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
8 Hb_148644_010 0.0692148153 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
9 Hb_004724_200 0.0720175022 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
10 Hb_002811_360 0.0725397197 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
11 Hb_001301_200 0.0727555653 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
12 Hb_019280_040 0.0730689198 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_010457_030 0.0733900147 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
14 Hb_000451_010 0.0745048428 - - secretory carrier membrane protein, putative [Ricinus communis]
15 Hb_000428_050 0.0755363777 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
16 Hb_003195_060 0.077156292 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
17 Hb_001675_180 0.0778931472 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
18 Hb_023344_030 0.0781358412 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
19 Hb_002835_080 0.0813252006 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
20 Hb_000365_390 0.0820890292 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]

Gene co-expression network

sample Hb_003195_070 Hb_003195_070 Hb_002506_020 Hb_002506_020 Hb_003195_070--Hb_002506_020 Hb_000010_330 Hb_000010_330 Hb_003195_070--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_003195_070--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_003195_070--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_003195_070--Hb_004109_090 Hb_002200_080 Hb_002200_080 Hb_003195_070--Hb_002200_080 Hb_000025_140 Hb_000025_140 Hb_002506_020--Hb_000025_140 Hb_000451_010 Hb_000451_010 Hb_002506_020--Hb_000451_010 Hb_000395_170 Hb_000395_170 Hb_002506_020--Hb_000395_170 Hb_002506_020--Hb_048937_040 Hb_002506_020--Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_000010_330--Hb_010457_030 Hb_019280_040 Hb_019280_040 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_000010_330--Hb_002200_080 Hb_000010_330--Hb_048937_040 Hb_007904_200--Hb_010457_030 Hb_007904_200--Hb_000451_010 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_048937_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_048937_040--Hb_003175_010 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_004109_090--Hb_003175_010 Hb_003929_160 Hb_003929_160 Hb_004109_090--Hb_003929_160 Hb_000409_020 Hb_000409_020 Hb_004109_090--Hb_000409_020 Hb_004109_090--Hb_004724_200 Hb_001818_090 Hb_001818_090 Hb_004109_090--Hb_001818_090 Hb_005663_060 Hb_005663_060 Hb_004109_090--Hb_005663_060 Hb_005144_160 Hb_005144_160 Hb_002200_080--Hb_005144_160 Hb_002200_080--Hb_019280_040 Hb_007691_030 Hb_007691_030 Hb_002200_080--Hb_007691_030 Hb_000085_160 Hb_000085_160 Hb_002200_080--Hb_000085_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.3966 14.2044 11.961 26.9897 36.8795 46.9127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.5456 30.6259 39.7498 16.5397 17.5667

CAGE analysis