Hb_019280_040

Information

Type -
Description -
Location Contig19280: 25328-35852
Sequence    

Annotation

kegg
ID rcu:RCOM_0577750
description hypothetical protein
nr
ID XP_012087921.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q2V3H0
description Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2
trembl
ID A0A067LEC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24025 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19208: 25427-35326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019280_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000010_330 0.0446825958 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
3 Hb_010457_030 0.051396546 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
4 Hb_003175_010 0.0519817314 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
5 Hb_002835_080 0.052184142 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
6 Hb_002200_080 0.0579381306 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
7 Hb_003417_020 0.0597783968 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
8 Hb_000120_670 0.0606786557 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
9 Hb_002182_080 0.061112581 - - 3-5 exonuclease, putative [Ricinus communis]
10 Hb_007416_280 0.0639257374 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000085_160 0.0659641022 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
12 Hb_007691_030 0.0661564736 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
13 Hb_004109_090 0.0674002656 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000451_010 0.0686580334 - - secretory carrier membrane protein, putative [Ricinus communis]
15 Hb_003665_060 0.0692155125 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
16 Hb_005144_160 0.0699855329 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
17 Hb_048937_040 0.0704461846 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
18 Hb_001009_270 0.070809648 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
19 Hb_004032_150 0.0711856233 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
20 Hb_000808_270 0.0715702075 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_019280_040 Hb_019280_040 Hb_000010_330 Hb_000010_330 Hb_019280_040--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_019280_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_019280_040--Hb_003175_010 Hb_002835_080 Hb_002835_080 Hb_019280_040--Hb_002835_080 Hb_002200_080 Hb_002200_080 Hb_019280_040--Hb_002200_080 Hb_003417_020 Hb_003417_020 Hb_019280_040--Hb_003417_020 Hb_007904_200 Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_000010_330--Hb_010457_030 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040 Hb_010457_030--Hb_048937_040 Hb_010457_030--Hb_007904_200 Hb_000365_390 Hb_000365_390 Hb_010457_030--Hb_000365_390 Hb_010457_030--Hb_003175_010 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_003175_010--Hb_000926_280 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_003175_010--Hb_048937_040 Hb_148644_010 Hb_148644_010 Hb_002835_080--Hb_148644_010 Hb_002182_080 Hb_002182_080 Hb_002835_080--Hb_002182_080 Hb_002835_080--Hb_000010_330 Hb_000959_260 Hb_000959_260 Hb_002835_080--Hb_000959_260 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030 Hb_005144_160 Hb_005144_160 Hb_002200_080--Hb_005144_160 Hb_002200_080--Hb_007691_030 Hb_003195_070 Hb_003195_070 Hb_002200_080--Hb_003195_070 Hb_000085_160 Hb_000085_160 Hb_002200_080--Hb_000085_160 Hb_003126_050 Hb_003126_050 Hb_003417_020--Hb_003126_050 Hb_001305_010 Hb_001305_010 Hb_003417_020--Hb_001305_010 Hb_003417_020--Hb_007691_030 Hb_003417_020--Hb_003175_010 Hb_007951_060 Hb_007951_060 Hb_003417_020--Hb_007951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2069 5.99977 6.24851 9.08963 10.6621 14.9529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.52492 13.0497 13.7262 8.75326 6.07041

CAGE analysis