Hb_001305_010

Information

Type -
Description -
Location Contig1305: 14235-18902
Sequence    

Annotation

kegg
ID rcu:RCOM_0623360
description 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (EC:2.3.1.51)
nr
ID XP_012071517.1
description PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q8GXU8
description 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=LPAT1 PE=2 SV=1
trembl
ID A0A067L2I4
description 1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Jatropha curcas GN=JCGZ_04038 PE=3 SV=1
Gene Ontology
ID GO:0009941
description 1-acyl-sn-glycerol-3-phosphate acyltransferase chloroplastic-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09075: 14154-18886 , PASA_asmbl_09076: 14249-18584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001305_010 0.0 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
2 Hb_007951_060 0.049791757 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_006185_050 0.0515822236 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
4 Hb_003417_020 0.0551997177 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
5 Hb_002530_030 0.0610358428 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
6 Hb_000327_120 0.0640497654 - - FGFR1 oncogene partner, putative [Ricinus communis]
7 Hb_000853_430 0.0654340246 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
8 Hb_000008_470 0.0668621578 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
9 Hb_096563_010 0.0669696679 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
10 Hb_025645_010 0.0685351578 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
11 Hb_001301_160 0.0691886377 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
12 Hb_001595_030 0.0712358138 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
13 Hb_003175_010 0.0717157871 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
14 Hb_000926_280 0.0721144027 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
15 Hb_009421_020 0.0733145017 - - PREDICTED: caltractin-like [Jatropha curcas]
16 Hb_001439_150 0.0750641232 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
17 Hb_000175_460 0.0755337647 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_000010_400 0.0755466635 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
19 Hb_007576_040 0.0757971525 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
20 Hb_001242_060 0.0768331614 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]

Gene co-expression network

sample Hb_001305_010 Hb_001305_010 Hb_007951_060 Hb_007951_060 Hb_001305_010--Hb_007951_060 Hb_006185_050 Hb_006185_050 Hb_001305_010--Hb_006185_050 Hb_003417_020 Hb_003417_020 Hb_001305_010--Hb_003417_020 Hb_002530_030 Hb_002530_030 Hb_001305_010--Hb_002530_030 Hb_000327_120 Hb_000327_120 Hb_001305_010--Hb_000327_120 Hb_000853_430 Hb_000853_430 Hb_001305_010--Hb_000853_430 Hb_007951_060--Hb_000327_120 Hb_000926_280 Hb_000926_280 Hb_007951_060--Hb_000926_280 Hb_001439_150 Hb_001439_150 Hb_007951_060--Hb_001439_150 Hb_007951_060--Hb_003417_020 Hb_007576_040 Hb_007576_040 Hb_007951_060--Hb_007576_040 Hb_000392_300 Hb_000392_300 Hb_006185_050--Hb_000392_300 Hb_000089_220 Hb_000089_220 Hb_006185_050--Hb_000089_220 Hb_006185_050--Hb_000327_120 Hb_001595_030 Hb_001595_030 Hb_006185_050--Hb_001595_030 Hb_003175_010 Hb_003175_010 Hb_006185_050--Hb_003175_010 Hb_003126_050 Hb_003126_050 Hb_003417_020--Hb_003126_050 Hb_007691_030 Hb_007691_030 Hb_003417_020--Hb_007691_030 Hb_003417_020--Hb_003175_010 Hb_019280_040 Hb_019280_040 Hb_003417_020--Hb_019280_040 Hb_000317_240 Hb_000317_240 Hb_002530_030--Hb_000317_240 Hb_120410_010 Hb_120410_010 Hb_002530_030--Hb_120410_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_004310_150 Hb_004310_150 Hb_002530_030--Hb_004310_150 Hb_011995_010 Hb_011995_010 Hb_002530_030--Hb_011995_010 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_000327_120--Hb_001595_030 Hb_004678_040 Hb_004678_040 Hb_000853_430--Hb_004678_040 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_000008_470 Hb_000008_470 Hb_000853_430--Hb_000008_470 Hb_012389_020 Hb_012389_020 Hb_000853_430--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_000853_430--Hb_000302_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2977 5.19827 6.97043 4.86981 9.43711 9.27698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.3337 11.2385 9.22014 4.63381 3.34812

CAGE analysis