Hb_012389_020

Information

Type -
Description -
Location Contig12389: 20793-25761
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05190g
description POPTRDRAFT_813903; hypothetical protein
nr
ID XP_002308035.1
description hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
swissprot
ID Q5ZLH4
description Transmembrane protein 230 OS=Gallus gallus GN=TMEM230 PE=2 SV=1
trembl
ID B9H9W7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05190g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07235: 20738-25721 , PASA_asmbl_07236: 23861-24028
cDNA
(Sanger)
(ID:Location)		 014_F20.ab1: 20855-25721 , 045_O02.ab1: 20966-25609

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012389_020 0.0 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
2 Hb_002192_080 0.0579304775 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
3 Hb_004586_140 0.0705351561 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
4 Hb_003125_200 0.0709888512 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
5 Hb_004931_070 0.0761181285 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
6 Hb_000302_270 0.0763050597 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
7 Hb_000853_430 0.0769559672 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
8 Hb_000107_190 0.0772145974 - - 50S ribosomal protein L20 [Hevea brasiliensis]
9 Hb_032920_060 0.077591488 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
10 Hb_002296_050 0.0828813694 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
11 Hb_001305_010 0.0830203683 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
12 Hb_003078_040 0.0845674268 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
13 Hb_000610_010 0.085916204 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
14 Hb_000041_270 0.0865642531 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
15 Hb_000308_030 0.0866687305 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
16 Hb_002530_030 0.088860838 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
17 Hb_000009_530 0.0893436808 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
18 Hb_000275_170 0.0894358115 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
19 Hb_027295_010 0.0896473199 - - 40S ribosomal protein S7, putative [Ricinus communis]
20 Hb_036790_100 0.0896982799 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]

Gene co-expression network

sample Hb_012389_020 Hb_012389_020 Hb_002192_080 Hb_002192_080 Hb_012389_020--Hb_002192_080 Hb_004586_140 Hb_004586_140 Hb_012389_020--Hb_004586_140 Hb_003125_200 Hb_003125_200 Hb_012389_020--Hb_003125_200 Hb_004931_070 Hb_004931_070 Hb_012389_020--Hb_004931_070 Hb_000302_270 Hb_000302_270 Hb_012389_020--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_012389_020--Hb_000853_430 Hb_000261_250 Hb_000261_250 Hb_002192_080--Hb_000261_250 Hb_106552_050 Hb_106552_050 Hb_002192_080--Hb_106552_050 Hb_000107_190 Hb_000107_190 Hb_002192_080--Hb_000107_190 Hb_003849_060 Hb_003849_060 Hb_002192_080--Hb_003849_060 Hb_032920_060 Hb_032920_060 Hb_002192_080--Hb_032920_060 Hb_000179_070 Hb_000179_070 Hb_004586_140--Hb_000179_070 Hb_004586_140--Hb_000302_270 Hb_000061_470 Hb_000061_470 Hb_004586_140--Hb_000061_470 Hb_000308_030 Hb_000308_030 Hb_004586_140--Hb_000308_030 Hb_000521_320 Hb_000521_320 Hb_004586_140--Hb_000521_320 Hb_000465_460 Hb_000465_460 Hb_003125_200--Hb_000465_460 Hb_001758_100 Hb_001758_100 Hb_003125_200--Hb_001758_100 Hb_003125_200--Hb_004931_070 Hb_027472_040 Hb_027472_040 Hb_003125_200--Hb_027472_040 Hb_029388_020 Hb_029388_020 Hb_003125_200--Hb_029388_020 Hb_004931_070--Hb_000465_460 Hb_000421_070 Hb_000421_070 Hb_004931_070--Hb_000421_070 Hb_000317_240 Hb_000317_240 Hb_004931_070--Hb_000317_240 Hb_002530_030 Hb_002530_030 Hb_004931_070--Hb_002530_030 Hb_000302_270--Hb_000521_320 Hb_000185_070 Hb_000185_070 Hb_000302_270--Hb_000185_070 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_000010_400 Hb_000010_400 Hb_000302_270--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000302_270--Hb_004678_040 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060 Hb_001305_010 Hb_001305_010 Hb_000853_430--Hb_001305_010 Hb_000853_430--Hb_004678_040 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_000008_470 Hb_000008_470 Hb_000853_430--Hb_000008_470 Hb_000853_430--Hb_000302_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.321 98.9314 107.498 56.9792 100.649 126.456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.899 147.834 89.9178 65.3211 25.3591

CAGE analysis