Hb_027472_040

Information

Type -
Description -
Location Contig27472: 9982-10524
Sequence    

Annotation

kegg
ID rcu:RCOM_1574640
description skp1, putative
nr
ID AEI90837.1
description SKP1 [Hevea brasiliensis]
swissprot
ID O81057
description SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1
trembl
ID G0WRD2
description SKP1 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0006511
description skp1-like protein 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28755: 9946-10734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_040 0.0 - - SKP1 [Hevea brasiliensis]
2 Hb_000610_050 0.0642250597 - - skp1, putative [Ricinus communis]
3 Hb_003125_200 0.0714911637 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
4 Hb_001504_020 0.0723303042 - - 40S ribosomal protein S12A [Hevea brasiliensis]
5 Hb_029388_020 0.0754523136 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000457_100 0.0760743688 - - prohibitin, putative [Ricinus communis]
7 Hb_007576_080 0.0764558695 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
8 Hb_007423_040 0.0765435261 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
9 Hb_024071_020 0.0780320553 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
10 Hb_000796_210 0.0789687326 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005365_030 0.0791845102 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
12 Hb_015279_010 0.0798904085 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
13 Hb_003780_030 0.0811743275 - - PREDICTED: protein CMSS1 [Jatropha curcas]
14 Hb_000905_060 0.0816227719 - - protein with unknown function [Ricinus communis]
15 Hb_001481_090 0.0817884321 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
16 Hb_003935_020 0.0820361022 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001534_120 0.0820650489 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
18 Hb_002585_040 0.0820989249 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
19 Hb_014109_040 0.083079099 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
20 Hb_004837_240 0.0842548048 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_027472_040 Hb_027472_040 Hb_000610_050 Hb_000610_050 Hb_027472_040--Hb_000610_050 Hb_003125_200 Hb_003125_200 Hb_027472_040--Hb_003125_200 Hb_001504_020 Hb_001504_020 Hb_027472_040--Hb_001504_020 Hb_029388_020 Hb_029388_020 Hb_027472_040--Hb_029388_020 Hb_000457_100 Hb_000457_100 Hb_027472_040--Hb_000457_100 Hb_007576_080 Hb_007576_080 Hb_027472_040--Hb_007576_080 Hb_024071_020 Hb_024071_020 Hb_000610_050--Hb_024071_020 Hb_002893_050 Hb_002893_050 Hb_000610_050--Hb_002893_050 Hb_007875_030 Hb_007875_030 Hb_000610_050--Hb_007875_030 Hb_000796_210 Hb_000796_210 Hb_000610_050--Hb_000796_210 Hb_000342_100 Hb_000342_100 Hb_000610_050--Hb_000342_100 Hb_000465_460 Hb_000465_460 Hb_003125_200--Hb_000465_460 Hb_001758_100 Hb_001758_100 Hb_003125_200--Hb_001758_100 Hb_004931_070 Hb_004931_070 Hb_003125_200--Hb_004931_070 Hb_012389_020 Hb_012389_020 Hb_003125_200--Hb_012389_020 Hb_003125_200--Hb_029388_020 Hb_002112_020 Hb_002112_020 Hb_001504_020--Hb_002112_020 Hb_021419_020 Hb_021419_020 Hb_001504_020--Hb_021419_020 Hb_002234_140 Hb_002234_140 Hb_001504_020--Hb_002234_140 Hb_010921_010 Hb_010921_010 Hb_001504_020--Hb_010921_010 Hb_175215_010 Hb_175215_010 Hb_001504_020--Hb_175215_010 Hb_000684_380 Hb_000684_380 Hb_029388_020--Hb_000684_380 Hb_005365_030 Hb_005365_030 Hb_029388_020--Hb_005365_030 Hb_002995_020 Hb_002995_020 Hb_029388_020--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_029388_020--Hb_001691_140 Hb_001481_090 Hb_001481_090 Hb_000457_100--Hb_001481_090 Hb_000457_100--Hb_007576_080 Hb_004837_240 Hb_004837_240 Hb_000457_100--Hb_004837_240 Hb_003935_020 Hb_003935_020 Hb_000457_100--Hb_003935_020 Hb_002585_040 Hb_002585_040 Hb_000457_100--Hb_002585_040 Hb_014109_040 Hb_014109_040 Hb_007576_080--Hb_014109_040 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_000589_120 Hb_000589_120 Hb_007576_080--Hb_000589_120 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_007576_080--Hb_002585_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.0653 28.1286 25.9671 25.2786 34.1445 28.8571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.3341 67.3544 23.0557 30.8206 11.4203

CAGE analysis