Hb_002234_140

Information

Type -
Description -
Location Contig2234: 110759-113434
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13600g
description POPTRDRAFT_824910; DNA-directed RNA polymerase II family protein
nr
ID XP_002322450.1
description DNA-directed RNA polymerase II family protein [Populus trichocarpa]
swissprot
ID Q9FJ98
description DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana GN=NRPB6A PE=1 SV=1
trembl
ID B9ID35
description DNA-directed RNA polymerase II family protein OS=Populus trichocarpa GN=POPTR_0015s13600g PE=3 SV=1
Gene Ontology
ID GO:0000418
description dna-directed rna polymerases iv and v subunit 6a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23175: 110690-113395 , PASA_asmbl_23176: 110690-115198 , PASA_asmbl_23177: 114151-114613
cDNA
(Sanger)
(ID:Location)		 009_E15.ab1: 110861-113396 , 046_A21.ab1: 110826-113395

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_140 0.0 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
2 Hb_001504_020 0.0728389177 - - 40S ribosomal protein S12A [Hevea brasiliensis]
3 Hb_021576_040 0.0741348133 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000444_080 0.0755854846 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
5 Hb_000563_230 0.0762706751 - - phospholipase d zeta, putative [Ricinus communis]
6 Hb_003935_020 0.0774315442 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000009_530 0.0777021151 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
8 Hb_000959_210 0.079480835 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
9 Hb_000286_070 0.0799203933 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
10 Hb_001534_120 0.0828553551 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
11 Hb_010921_010 0.0854240461 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
12 Hb_000610_010 0.0854656472 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
13 Hb_002296_050 0.0863301382 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
14 Hb_003687_230 0.0864791116 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
15 Hb_027472_040 0.0866140448 - - SKP1 [Hevea brasiliensis]
16 Hb_003125_200 0.0884659206 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
17 Hb_003078_040 0.0886478423 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
18 Hb_007423_040 0.0889125493 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
19 Hb_002585_040 0.0911103118 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
20 Hb_001481_090 0.0938216666 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002234_140 Hb_002234_140 Hb_001504_020 Hb_001504_020 Hb_002234_140--Hb_001504_020 Hb_021576_040 Hb_021576_040 Hb_002234_140--Hb_021576_040 Hb_000444_080 Hb_000444_080 Hb_002234_140--Hb_000444_080 Hb_000563_230 Hb_000563_230 Hb_002234_140--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_002234_140--Hb_003935_020 Hb_000009_530 Hb_000009_530 Hb_002234_140--Hb_000009_530 Hb_002112_020 Hb_002112_020 Hb_001504_020--Hb_002112_020 Hb_021419_020 Hb_021419_020 Hb_001504_020--Hb_021419_020 Hb_027472_040 Hb_027472_040 Hb_001504_020--Hb_027472_040 Hb_010921_010 Hb_010921_010 Hb_001504_020--Hb_010921_010 Hb_175215_010 Hb_175215_010 Hb_001504_020--Hb_175215_010 Hb_002296_050 Hb_002296_050 Hb_021576_040--Hb_002296_050 Hb_021576_040--Hb_000009_530 Hb_000144_100 Hb_000144_100 Hb_021576_040--Hb_000144_100 Hb_000610_010 Hb_000610_010 Hb_021576_040--Hb_000610_010 Hb_000710_010 Hb_000710_010 Hb_021576_040--Hb_000710_010 Hb_000444_080--Hb_010921_010 Hb_000444_080--Hb_000009_530 Hb_001552_020 Hb_001552_020 Hb_000444_080--Hb_001552_020 Hb_000116_310 Hb_000116_310 Hb_000444_080--Hb_000116_310 Hb_001512_060 Hb_001512_060 Hb_000444_080--Hb_001512_060 Hb_152175_010 Hb_152175_010 Hb_000563_230--Hb_152175_010 Hb_003125_120 Hb_003125_120 Hb_000563_230--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_000563_230--Hb_008453_140 Hb_014109_040 Hb_014109_040 Hb_000563_230--Hb_014109_040 Hb_003001_080 Hb_003001_080 Hb_000563_230--Hb_003001_080 Hb_000340_400 Hb_000340_400 Hb_000563_230--Hb_000340_400 Hb_000959_210 Hb_000959_210 Hb_003935_020--Hb_000959_210 Hb_003935_020--Hb_014109_040 Hb_004093_090 Hb_004093_090 Hb_003935_020--Hb_004093_090 Hb_004032_430 Hb_004032_430 Hb_003935_020--Hb_004032_430 Hb_120410_010 Hb_120410_010 Hb_003935_020--Hb_120410_010 Hb_002652_030 Hb_002652_030 Hb_003935_020--Hb_002652_030 Hb_000009_530--Hb_000610_010 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_003687_230 Hb_003687_230 Hb_000009_530--Hb_003687_230 Hb_000009_530--Hb_004093_090 Hb_000009_530--Hb_000144_100 Hb_003292_040 Hb_003292_040 Hb_000009_530--Hb_003292_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
263.58 199.107 201.036 99.1934 201.882 184.027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
249.42 373.393 120.126 138.889 105.141

CAGE analysis