Hb_000444_080

Information

Type -
Description -
Location Contig444: 195780-199789
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10500g
description POPTRDRAFT_665696; hypothetical protein
nr
ID XP_002325526.1
description hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PCL6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s10500g PE=2 SV=1
Gene Ontology
ID GO:0009535
description zinc finger and btb domain-containing protein 11 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42758: 195885-199717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000444_080 0.0 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
2 Hb_002234_140 0.0755854846 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
3 Hb_010921_010 0.0914751167 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
4 Hb_000009_530 0.0916585422 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
5 Hb_001552_020 0.0938468491 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
6 Hb_000116_310 0.0953183932 - - 50S robosomal protein L11, putative [Ricinus communis]
7 Hb_001512_060 0.0957201176 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
8 Hb_001534_120 0.0960022131 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
9 Hb_047503_010 0.0971349208 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
10 Hb_004093_090 0.0976092053 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
11 Hb_004449_170 0.0985353487 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
12 Hb_000959_210 0.098826483 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
13 Hb_007154_020 0.0990025471 - - -
14 Hb_009421_020 0.0991672013 - - PREDICTED: caltractin-like [Jatropha curcas]
15 Hb_004410_080 0.09981521 - - cellular nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000362_200 0.100743769 - - exonuclease family protein [Populus trichocarpa]
17 Hb_000656_240 0.102013721 - - proteasome subunit alpha type, putative [Ricinus communis]
18 Hb_000633_020 0.1022368007 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
19 Hb_012016_010 0.1025219503 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
20 Hb_001998_120 0.1025738468 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000444_080 Hb_000444_080 Hb_002234_140 Hb_002234_140 Hb_000444_080--Hb_002234_140 Hb_010921_010 Hb_010921_010 Hb_000444_080--Hb_010921_010 Hb_000009_530 Hb_000009_530 Hb_000444_080--Hb_000009_530 Hb_001552_020 Hb_001552_020 Hb_000444_080--Hb_001552_020 Hb_000116_310 Hb_000116_310 Hb_000444_080--Hb_000116_310 Hb_001512_060 Hb_001512_060 Hb_000444_080--Hb_001512_060 Hb_001504_020 Hb_001504_020 Hb_002234_140--Hb_001504_020 Hb_021576_040 Hb_021576_040 Hb_002234_140--Hb_021576_040 Hb_000563_230 Hb_000563_230 Hb_002234_140--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_002234_140--Hb_003935_020 Hb_002234_140--Hb_000009_530 Hb_010921_010--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_010921_010--Hb_001534_120 Hb_005993_040 Hb_005993_040 Hb_010921_010--Hb_005993_040 Hb_007154_020 Hb_007154_020 Hb_010921_010--Hb_007154_020 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_000109_090 Hb_000109_090 Hb_010921_010--Hb_000109_090 Hb_000610_010 Hb_000610_010 Hb_000009_530--Hb_000610_010 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_003687_230 Hb_003687_230 Hb_000009_530--Hb_003687_230 Hb_004093_090 Hb_004093_090 Hb_000009_530--Hb_004093_090 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_003292_040 Hb_003292_040 Hb_000009_530--Hb_003292_040 Hb_028995_040 Hb_028995_040 Hb_001552_020--Hb_028995_040 Hb_029866_090 Hb_029866_090 Hb_001552_020--Hb_029866_090 Hb_002739_100 Hb_002739_100 Hb_001552_020--Hb_002739_100 Hb_000656_400 Hb_000656_400 Hb_001552_020--Hb_000656_400 Hb_002256_030 Hb_002256_030 Hb_001552_020--Hb_002256_030 Hb_002346_020 Hb_002346_020 Hb_001552_020--Hb_002346_020 Hb_011609_100 Hb_011609_100 Hb_000116_310--Hb_011609_100 Hb_005332_070 Hb_005332_070 Hb_000116_310--Hb_005332_070 Hb_001898_230 Hb_001898_230 Hb_000116_310--Hb_001898_230 Hb_000275_170 Hb_000275_170 Hb_000116_310--Hb_000275_170 Hb_000959_210 Hb_000959_210 Hb_000116_310--Hb_000959_210 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_001512_060--Hb_007154_020 Hb_001512_060--Hb_002346_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.9308 35.0038 46.2958 15.1027 45.3348 34.4409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.393 76.2469 33.9832 19.6525 29.6128

CAGE analysis