Hb_000116_310

Information

Type -
Description -
Location Contig116: 268321-268788
Sequence    

Annotation

kegg
ID rcu:RCOM_0874950
description 50S robosomal protein L11, putative
nr
ID XP_002521730.1
description 50S robosomal protein L11, putative [Ricinus communis]
swissprot
ID Q9UTK2
description 54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl19 PE=3 SV=1
trembl
ID B9S6W1
description 50S robosomal protein L11, putative OS=Ricinus communis GN=RCOM_0874950 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 54s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_310 0.0 - - 50S robosomal protein L11, putative [Ricinus communis]
2 Hb_000444_080 0.0953183932 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
3 Hb_011609_100 0.095399767 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
4 Hb_005332_070 0.0994520764 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
5 Hb_001898_230 0.1023914771 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
6 Hb_000275_170 0.1066883179 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
7 Hb_000959_210 0.1068410695 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
8 Hb_008554_030 0.107179977 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
9 Hb_000788_100 0.108127552 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
10 Hb_001348_070 0.1085786464 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_007154_020 0.1092646136 - - -
12 Hb_006502_090 0.1093765669 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
13 Hb_054865_090 0.1094057959 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
14 Hb_002918_210 0.1100411438 - - PREDICTED: uncharacterized protein LOC105138897 isoform X2 [Populus euphratica]
15 Hb_000663_040 0.1106898343 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
16 Hb_004093_090 0.1114112539 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
17 Hb_001512_060 0.1114845611 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
18 Hb_001934_030 0.1115469228 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
19 Hb_135545_010 0.1127552975 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_009421_020 0.1134145126 - - PREDICTED: caltractin-like [Jatropha curcas]

Gene co-expression network

sample Hb_000116_310 Hb_000116_310 Hb_000444_080 Hb_000444_080 Hb_000116_310--Hb_000444_080 Hb_011609_100 Hb_011609_100 Hb_000116_310--Hb_011609_100 Hb_005332_070 Hb_005332_070 Hb_000116_310--Hb_005332_070 Hb_001898_230 Hb_001898_230 Hb_000116_310--Hb_001898_230 Hb_000275_170 Hb_000275_170 Hb_000116_310--Hb_000275_170 Hb_000959_210 Hb_000959_210 Hb_000116_310--Hb_000959_210 Hb_002234_140 Hb_002234_140 Hb_000444_080--Hb_002234_140 Hb_010921_010 Hb_010921_010 Hb_000444_080--Hb_010921_010 Hb_000009_530 Hb_000009_530 Hb_000444_080--Hb_000009_530 Hb_001552_020 Hb_001552_020 Hb_000444_080--Hb_001552_020 Hb_001512_060 Hb_001512_060 Hb_000444_080--Hb_001512_060 Hb_003992_240 Hb_003992_240 Hb_011609_100--Hb_003992_240 Hb_005322_040 Hb_005322_040 Hb_011609_100--Hb_005322_040 Hb_003125_200 Hb_003125_200 Hb_011609_100--Hb_003125_200 Hb_047503_010 Hb_047503_010 Hb_011609_100--Hb_047503_010 Hb_011609_100--Hb_000959_210 Hb_002346_020 Hb_002346_020 Hb_011609_100--Hb_002346_020 Hb_011571_020 Hb_011571_020 Hb_005332_070--Hb_011571_020 Hb_000473_040 Hb_000473_040 Hb_005332_070--Hb_000473_040 Hb_000089_220 Hb_000089_220 Hb_005332_070--Hb_000089_220 Hb_011360_140 Hb_011360_140 Hb_005332_070--Hb_011360_140 Hb_012762_050 Hb_012762_050 Hb_005332_070--Hb_012762_050 Hb_003001_140 Hb_003001_140 Hb_005332_070--Hb_003001_140 Hb_019962_030 Hb_019962_030 Hb_001898_230--Hb_019962_030 Hb_007164_020 Hb_007164_020 Hb_001898_230--Hb_007164_020 Hb_001511_020 Hb_001511_020 Hb_001898_230--Hb_001511_020 Hb_001898_230--Hb_000089_220 Hb_001898_230--Hb_000473_040 Hb_007007_050 Hb_007007_050 Hb_001898_230--Hb_007007_050 Hb_004032_430 Hb_004032_430 Hb_000275_170--Hb_004032_430 Hb_000220_040 Hb_000220_040 Hb_000275_170--Hb_000220_040 Hb_004310_150 Hb_004310_150 Hb_000275_170--Hb_004310_150 Hb_112798_020 Hb_112798_020 Hb_000275_170--Hb_112798_020 Hb_005694_110 Hb_005694_110 Hb_000275_170--Hb_005694_110 Hb_000275_170--Hb_000959_210 Hb_003935_020 Hb_003935_020 Hb_000959_210--Hb_003935_020 Hb_002652_030 Hb_002652_030 Hb_000959_210--Hb_002652_030 Hb_120410_010 Hb_120410_010 Hb_000959_210--Hb_120410_010 Hb_000959_210--Hb_004032_430 Hb_004093_090 Hb_004093_090 Hb_000959_210--Hb_004093_090 Hb_002530_030 Hb_002530_030 Hb_000959_210--Hb_002530_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.6868 22.1453 26.0309 6.00999 33.3228 30.4395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2438 51.2394 22.6191 11.0931 15.8251

CAGE analysis