Hb_007164_020

Information

Type -
Description -
Location Contig7164: 26937-44466
Sequence    

Annotation

kegg
ID rcu:RCOM_0158420
description hypothetical protein
nr
ID KHN30381.1
description hypothetical protein glysoja_025872 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2R7G3
description Uncharacterized protein OS=Glycine soja GN=glysoja_025872 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55480: 32168-35428 , PASA_asmbl_55481: 32096-32571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007164_020 0.0 - - hypothetical protein glysoja_025872 [Glycine soja]
2 Hb_189147_010 0.0751649467 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_001504_150 0.0753125488 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
4 Hb_001898_230 0.0761003311 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
5 Hb_106552_050 0.0794147673 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
6 Hb_000085_240 0.0842044224 - - fimbrin, putative [Ricinus communis]
7 Hb_000359_330 0.0846729576 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001828_200 0.0863123414 - - ribosomal protein L13 [Populus trichocarpa]
9 Hb_000465_470 0.0865706127 - - unknown [Picea sitchensis]
10 Hb_019962_030 0.0882271438 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
11 Hb_000663_040 0.0906275171 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
12 Hb_000740_070 0.0912345413 - - -
13 Hb_007007_050 0.0915283527 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
14 Hb_000394_190 0.0919979072 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
15 Hb_001439_150 0.0965877713 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
16 Hb_000666_110 0.098861811 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
17 Hb_002292_010 0.0991069285 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
18 Hb_002192_080 0.0991746604 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
19 Hb_000244_300 0.0993728798 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
20 Hb_001511_020 0.0999171011 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]

Gene co-expression network

sample Hb_007164_020 Hb_007164_020 Hb_189147_010 Hb_189147_010 Hb_007164_020--Hb_189147_010 Hb_001504_150 Hb_001504_150 Hb_007164_020--Hb_001504_150 Hb_001898_230 Hb_001898_230 Hb_007164_020--Hb_001898_230 Hb_106552_050 Hb_106552_050 Hb_007164_020--Hb_106552_050 Hb_000085_240 Hb_000085_240 Hb_007164_020--Hb_000085_240 Hb_000359_330 Hb_000359_330 Hb_007164_020--Hb_000359_330 Hb_189147_010--Hb_106552_050 Hb_002805_160 Hb_002805_160 Hb_189147_010--Hb_002805_160 Hb_000465_470 Hb_000465_470 Hb_189147_010--Hb_000465_470 Hb_003371_150 Hb_003371_150 Hb_189147_010--Hb_003371_150 Hb_003052_140 Hb_003052_140 Hb_189147_010--Hb_003052_140 Hb_000666_110 Hb_000666_110 Hb_001504_150--Hb_000666_110 Hb_005701_040 Hb_005701_040 Hb_001504_150--Hb_005701_040 Hb_019962_030 Hb_019962_030 Hb_001504_150--Hb_019962_030 Hb_000205_120 Hb_000205_120 Hb_001504_150--Hb_000205_120 Hb_001504_150--Hb_000085_240 Hb_001898_230--Hb_019962_030 Hb_001511_020 Hb_001511_020 Hb_001898_230--Hb_001511_020 Hb_000089_220 Hb_000089_220 Hb_001898_230--Hb_000089_220 Hb_000473_040 Hb_000473_040 Hb_001898_230--Hb_000473_040 Hb_007007_050 Hb_007007_050 Hb_001898_230--Hb_007007_050 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150 Hb_000085_240--Hb_000666_110 Hb_000621_080 Hb_000621_080 Hb_000085_240--Hb_000621_080 Hb_000085_240--Hb_019962_030 Hb_001439_150 Hb_001439_150 Hb_000085_240--Hb_001439_150 Hb_011848_010 Hb_011848_010 Hb_000359_330--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000359_330--Hb_003091_010 Hb_000359_330--Hb_000808_250 Hb_000394_190 Hb_000394_190 Hb_000359_330--Hb_000394_190 Hb_006623_020 Hb_006623_020 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.0845 25.0419 22.132 10.5825 36.9775 36.1953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4013 30.8496 24.5703 9.49305 4.59704

CAGE analysis