Hb_189147_010

Information

Type transcription factor
Description TF Family: mTERF
Location Contig189147: 1526-2563
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID XP_002529476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SU07
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454380 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18772: 1474-2171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189147_010 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_007164_020 0.0751649467 - - hypothetical protein glysoja_025872 [Glycine soja]
3 Hb_106552_050 0.0869220086 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
4 Hb_002805_160 0.0955635898 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
5 Hb_000465_470 0.0974537403 - - unknown [Picea sitchensis]
6 Hb_003371_150 0.1017509358 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
7 Hb_003052_140 0.1031001977 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
8 Hb_002027_260 0.1041039133 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
9 Hb_003464_050 0.1092669349 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
10 Hb_001439_150 0.1101410695 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
11 Hb_006185_050 0.1107150458 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
12 Hb_001898_230 0.1107867186 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
13 Hb_057878_010 0.1110195593 - - hypothetical protein VITISV_036304 [Vitis vinifera]
14 Hb_008803_090 0.1121273076 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
15 Hb_000125_170 0.112340995 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
16 Hb_001946_040 0.1133147243 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008511_030 0.1138593223 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
18 Hb_000663_040 0.1144139358 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
19 Hb_000976_320 0.1148766384 - - UPF0061 protein azo1574 [Morus notabilis]
20 Hb_002301_220 0.1153651828 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_189147_010 Hb_189147_010 Hb_007164_020 Hb_007164_020 Hb_189147_010--Hb_007164_020 Hb_106552_050 Hb_106552_050 Hb_189147_010--Hb_106552_050 Hb_002805_160 Hb_002805_160 Hb_189147_010--Hb_002805_160 Hb_000465_470 Hb_000465_470 Hb_189147_010--Hb_000465_470 Hb_003371_150 Hb_003371_150 Hb_189147_010--Hb_003371_150 Hb_003052_140 Hb_003052_140 Hb_189147_010--Hb_003052_140 Hb_001504_150 Hb_001504_150 Hb_007164_020--Hb_001504_150 Hb_001898_230 Hb_001898_230 Hb_007164_020--Hb_001898_230 Hb_007164_020--Hb_106552_050 Hb_000085_240 Hb_000085_240 Hb_007164_020--Hb_000085_240 Hb_000359_330 Hb_000359_330 Hb_007164_020--Hb_000359_330 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150 Hb_002805_160--Hb_000465_470 Hb_000025_140 Hb_000025_140 Hb_002805_160--Hb_000025_140 Hb_012022_160 Hb_012022_160 Hb_002805_160--Hb_012022_160 Hb_075481_030 Hb_075481_030 Hb_002805_160--Hb_075481_030 Hb_001752_030 Hb_001752_030 Hb_002805_160--Hb_001752_030 Hb_001541_260 Hb_001541_260 Hb_000465_470--Hb_001541_260 Hb_000465_470--Hb_106552_050 Hb_000236_100 Hb_000236_100 Hb_000465_470--Hb_000236_100 Hb_000663_040 Hb_000663_040 Hb_000465_470--Hb_000663_040 Hb_002301_220 Hb_002301_220 Hb_000465_470--Hb_002301_220 Hb_000032_490 Hb_000032_490 Hb_000465_470--Hb_000032_490 Hb_001946_040 Hb_001946_040 Hb_003371_150--Hb_001946_040 Hb_000959_270 Hb_000959_270 Hb_003371_150--Hb_000959_270 Hb_000610_010 Hb_000610_010 Hb_003371_150--Hb_000610_010 Hb_004093_090 Hb_004093_090 Hb_003371_150--Hb_004093_090 Hb_003581_070 Hb_003581_070 Hb_003371_150--Hb_003581_070 Hb_036790_100 Hb_036790_100 Hb_003371_150--Hb_036790_100 Hb_000336_250 Hb_000336_250 Hb_003052_140--Hb_000336_250 Hb_000125_170 Hb_000125_170 Hb_003052_140--Hb_000125_170 Hb_005675_040 Hb_005675_040 Hb_003052_140--Hb_005675_040 Hb_005016_160 Hb_005016_160 Hb_003052_140--Hb_005016_160 Hb_007416_180 Hb_007416_180 Hb_003052_140--Hb_007416_180 Hb_005541_010 Hb_005541_010 Hb_003052_140--Hb_005541_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.065 26.5337 18.8122 16.2571 32.7977 31.5295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4365 27.345 29.1674 8.18256 7.20116

CAGE analysis