Hb_000085_240

Information

Type -
Description -
Location Contig85: 190043-197031
Sequence    

Annotation

kegg
ID rcu:RCOM_0955100
description fimbrin, putative
nr
ID XP_002515869.1
description fimbrin, putative [Ricinus communis]
swissprot
ID Q7G188
description Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2
trembl
ID B9RQ50
description Fimbrin, putative OS=Ricinus communis GN=RCOM_0955100 PE=4 SV=1
Gene Ontology
ID GO:0005515
description fimbrin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60361: 195378-196057 , PASA_asmbl_60362: 196715-197453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_240 0.0 - - fimbrin, putative [Ricinus communis]
2 Hb_000666_110 0.0840931319 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
3 Hb_007164_020 0.0842044224 - - hypothetical protein glysoja_025872 [Glycine soja]
4 Hb_001504_150 0.0845912724 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
5 Hb_000621_080 0.1018645115 - - conserved hypothetical protein [Ricinus communis]
6 Hb_019962_030 0.1059927303 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
7 Hb_001439_150 0.1067188567 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
8 Hb_000141_060 0.1085954861 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
9 Hb_001511_020 0.1107207994 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
10 Hb_002192_080 0.1116400059 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
11 Hb_004722_060 0.1145441576 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
12 Hb_005701_040 0.1148443085 - - cellular nucleic acid binding protein, putative [Ricinus communis]
13 Hb_106552_050 0.1148736827 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
14 Hb_001828_200 0.1158998637 - - ribosomal protein L13 [Populus trichocarpa]
15 Hb_011848_010 0.1160670923 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
16 Hb_005503_030 0.1172003216 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
17 Hb_000130_380 0.1173514636 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
18 Hb_000359_330 0.1173826563 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000663_040 0.1186064775 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
20 Hb_001898_230 0.1207917773 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000085_240 Hb_000085_240 Hb_000666_110 Hb_000666_110 Hb_000085_240--Hb_000666_110 Hb_007164_020 Hb_007164_020 Hb_000085_240--Hb_007164_020 Hb_001504_150 Hb_001504_150 Hb_000085_240--Hb_001504_150 Hb_000621_080 Hb_000621_080 Hb_000085_240--Hb_000621_080 Hb_019962_030 Hb_019962_030 Hb_000085_240--Hb_019962_030 Hb_001439_150 Hb_001439_150 Hb_000085_240--Hb_001439_150 Hb_000666_110--Hb_001504_150 Hb_000666_110--Hb_019962_030 Hb_000141_060 Hb_000141_060 Hb_000666_110--Hb_000141_060 Hb_000538_020 Hb_000538_020 Hb_000666_110--Hb_000538_020 Hb_000905_190 Hb_000905_190 Hb_000666_110--Hb_000905_190 Hb_005503_030 Hb_005503_030 Hb_000666_110--Hb_005503_030 Hb_189147_010 Hb_189147_010 Hb_007164_020--Hb_189147_010 Hb_007164_020--Hb_001504_150 Hb_001898_230 Hb_001898_230 Hb_007164_020--Hb_001898_230 Hb_106552_050 Hb_106552_050 Hb_007164_020--Hb_106552_050 Hb_000359_330 Hb_000359_330 Hb_007164_020--Hb_000359_330 Hb_005701_040 Hb_005701_040 Hb_001504_150--Hb_005701_040 Hb_001504_150--Hb_019962_030 Hb_000205_120 Hb_000205_120 Hb_001504_150--Hb_000205_120 Hb_000923_020 Hb_000923_020 Hb_000621_080--Hb_000923_020 Hb_002495_070 Hb_002495_070 Hb_000621_080--Hb_002495_070 Hb_004722_060 Hb_004722_060 Hb_000621_080--Hb_004722_060 Hb_002150_080 Hb_002150_080 Hb_000621_080--Hb_002150_080 Hb_086639_070 Hb_086639_070 Hb_000621_080--Hb_086639_070 Hb_001610_110 Hb_001610_110 Hb_000621_080--Hb_001610_110 Hb_007007_050 Hb_007007_050 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_019962_030--Hb_004722_060 Hb_019962_030--Hb_001898_230 Hb_007951_060 Hb_007951_060 Hb_001439_150--Hb_007951_060 Hb_002685_140 Hb_002685_140 Hb_001439_150--Hb_002685_140 Hb_001511_020 Hb_001511_020 Hb_001439_150--Hb_001511_020 Hb_000000_080 Hb_000000_080 Hb_001439_150--Hb_000000_080 Hb_000327_120 Hb_000327_120 Hb_001439_150--Hb_000327_120 Hb_168707_030 Hb_168707_030 Hb_001439_150--Hb_168707_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.57709 1.87506 2.3185 0.797658 3.47947 3.46093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.1914 2.63887 2.16918 1.05785 0.111214

CAGE analysis