Hb_000905_190

Information

Type -
Description -
Location Contig905: 181623-185254
Sequence    

Annotation

kegg
ID pda:103702311
description U6 snRNA-associated Sm-like protein LSm7
nr
ID XP_010928862.1
description PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
swissprot
ID Q9SI54
description Sm-like protein LSM7 OS=Arabidopsis thaliana GN=LSM7 PE=1 SV=1
trembl
ID A0A061DVC4
description Small nuclear ribonucleoprotein family protein OS=Theobroma cacao GN=TCM_005909 PE=4 SV=1
Gene Ontology
ID GO:0005732
description u6 snrna-associated sm-like protein lsm7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62012: 181585-185244 , PASA_asmbl_62013: 183544-184011 , PASA_asmbl_62014: 181578-185301
cDNA
(Sanger)
(ID:Location)		 014_B15r.ab1: 179610-181397 , 033_B03.ab1: 181587-185202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_190 0.0 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
2 Hb_003642_060 0.0585249218 - - hypothetical protein RCOM_1189860 [Ricinus communis]
3 Hb_002997_170 0.0609020497 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
4 Hb_001214_130 0.0610932388 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
5 Hb_005928_060 0.0662710728 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
6 Hb_003453_020 0.0682059998 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
7 Hb_001741_140 0.070368422 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
8 Hb_000666_110 0.072439835 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
9 Hb_028639_060 0.0727561309 - - transporter, putative [Ricinus communis]
10 Hb_005527_050 0.0738807628 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
11 Hb_000997_020 0.0778846463 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
12 Hb_012305_070 0.0780065616 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012340_030 0.0790284635 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
14 Hb_148912_010 0.0794016284 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000943_070 0.0794927269 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
16 Hb_000165_030 0.0795162289 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
17 Hb_000538_020 0.0798258257 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
18 Hb_168918_020 0.0798323933 - - pectin acetylesterase, putative [Ricinus communis]
19 Hb_010128_130 0.0798779083 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
20 Hb_000172_370 0.0807547082 - - -

Gene co-expression network

sample Hb_000905_190 Hb_000905_190 Hb_003642_060 Hb_003642_060 Hb_000905_190--Hb_003642_060 Hb_002997_170 Hb_002997_170 Hb_000905_190--Hb_002997_170 Hb_001214_130 Hb_001214_130 Hb_000905_190--Hb_001214_130 Hb_005928_060 Hb_005928_060 Hb_000905_190--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_001741_140 Hb_001741_140 Hb_000905_190--Hb_001741_140 Hb_003642_060--Hb_001214_130 Hb_028639_060 Hb_028639_060 Hb_003642_060--Hb_028639_060 Hb_168707_030 Hb_168707_030 Hb_003642_060--Hb_168707_030 Hb_000089_220 Hb_000089_220 Hb_003642_060--Hb_000089_220 Hb_004195_160 Hb_004195_160 Hb_003642_060--Hb_004195_160 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_002997_170--Hb_001741_140 Hb_000997_020 Hb_000997_020 Hb_002997_170--Hb_000997_020 Hb_168918_020 Hb_168918_020 Hb_002997_170--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_002997_170--Hb_012340_030 Hb_001214_130--Hb_028639_060 Hb_003120_060 Hb_003120_060 Hb_001214_130--Hb_003120_060 Hb_000943_070 Hb_000943_070 Hb_001214_130--Hb_000943_070 Hb_000803_150 Hb_000803_150 Hb_001214_130--Hb_000803_150 Hb_005527_050 Hb_005527_050 Hb_005928_060--Hb_005527_050 Hb_005928_060--Hb_001214_130 Hb_000019_230 Hb_000019_230 Hb_005928_060--Hb_000019_230 Hb_005237_010 Hb_005237_010 Hb_005928_060--Hb_005237_010 Hb_005928_060--Hb_000997_020 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_010128_130 Hb_010128_130 Hb_001741_140--Hb_010128_130 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_001741_140--Hb_000997_020 Hb_000107_050 Hb_000107_050 Hb_001741_140--Hb_000107_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.601 38.4645 48.1343 29.2659 141.027 156.731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.892 104.775 79.0373 31.3628 22.2316

CAGE analysis