Hb_003120_060

Information

Type -
Description -
Location Contig3120: 21772-26619
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26400g
description POPTRDRAFT_860476; hypothetical protein
nr
ID XP_012073758.1
description PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
swissprot
ID Q8BWM0
description Prostaglandin E synthase 2 OS=Mus musculus GN=Ptges2 PE=1 SV=3
trembl
ID E6NTZ4
description JHL20J20.11 protein OS=Jatropha curcas GN=JHL20J20.11 PE=3 SV=1
Gene Ontology
ID GO:0008152
description prostaglandin e synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33000: 21079-21549 , PASA_asmbl_33001: 22283-22698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003120_060 0.0 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
2 Hb_000019_230 0.059230547 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
3 Hb_001214_130 0.0640078731 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
4 Hb_000188_100 0.067234401 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
5 Hb_003005_020 0.0729051023 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
6 Hb_003106_130 0.0783523726 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
7 Hb_003038_030 0.0795008875 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
8 Hb_000317_430 0.0798658715 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
9 Hb_118419_020 0.0815882369 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
10 Hb_000384_090 0.0817116754 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
11 Hb_143813_010 0.084573175 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
12 Hb_004204_200 0.0854100965 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
13 Hb_001221_230 0.0881336293 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003642_060 0.0881774875 - - hypothetical protein RCOM_1189860 [Ricinus communis]
15 Hb_000035_380 0.0887186303 - - -
16 Hb_001246_100 0.0895898778 - - Ras-related small GTP-binding family protein [Theobroma cacao]
17 Hb_000608_030 0.0896292924 - - hypothetical protein JCGZ_18019 [Jatropha curcas]
18 Hb_000905_190 0.0900933529 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
19 Hb_004195_160 0.0902553709 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
20 Hb_063134_010 0.0906694705 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]

Gene co-expression network

sample Hb_003120_060 Hb_003120_060 Hb_000019_230 Hb_000019_230 Hb_003120_060--Hb_000019_230 Hb_001214_130 Hb_001214_130 Hb_003120_060--Hb_001214_130 Hb_000188_100 Hb_000188_100 Hb_003120_060--Hb_000188_100 Hb_003005_020 Hb_003005_020 Hb_003120_060--Hb_003005_020 Hb_003106_130 Hb_003106_130 Hb_003120_060--Hb_003106_130 Hb_003038_030 Hb_003038_030 Hb_003120_060--Hb_003038_030 Hb_003551_020 Hb_003551_020 Hb_000019_230--Hb_003551_020 Hb_000019_230--Hb_003038_030 Hb_000019_230--Hb_000188_100 Hb_000977_080 Hb_000977_080 Hb_000019_230--Hb_000977_080 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160 Hb_028639_060 Hb_028639_060 Hb_001214_130--Hb_028639_060 Hb_003642_060 Hb_003642_060 Hb_001214_130--Hb_003642_060 Hb_000905_190 Hb_000905_190 Hb_001214_130--Hb_000905_190 Hb_000943_070 Hb_000943_070 Hb_001214_130--Hb_000943_070 Hb_000803_150 Hb_000803_150 Hb_001214_130--Hb_000803_150 Hb_000787_110 Hb_000787_110 Hb_000188_100--Hb_000787_110 Hb_000188_100--Hb_003038_030 Hb_079820_010 Hb_079820_010 Hb_000188_100--Hb_079820_010 Hb_000386_040 Hb_000386_040 Hb_000188_100--Hb_000386_040 Hb_004440_090 Hb_004440_090 Hb_003005_020--Hb_004440_090 Hb_000172_370 Hb_000172_370 Hb_003005_020--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_003005_020--Hb_000384_090 Hb_000608_030 Hb_000608_030 Hb_003005_020--Hb_000608_030 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_000398_180 Hb_000398_180 Hb_003005_020--Hb_000398_180 Hb_119583_010 Hb_119583_010 Hb_003106_130--Hb_119583_010 Hb_001246_100 Hb_001246_100 Hb_003106_130--Hb_001246_100 Hb_002942_020 Hb_002942_020 Hb_003106_130--Hb_002942_020 Hb_003106_130--Hb_000019_230 Hb_002235_150 Hb_002235_150 Hb_003106_130--Hb_002235_150 Hb_003038_030--Hb_148912_010 Hb_002411_170 Hb_002411_170 Hb_003038_030--Hb_002411_170 Hb_141131_010 Hb_141131_010 Hb_003038_030--Hb_141131_010 Hb_003038_030--Hb_000172_370 Hb_004545_060 Hb_004545_060 Hb_003038_030--Hb_004545_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.58212 2.06157 1.23026 1.54981 6.06827 8.77243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56801 6.23266 3.79514 1.41319 1.43168

CAGE analysis