Hb_000384_090

Information

Type -
Description -
Location Contig384: 134295-135962
Sequence    

Annotation

kegg
ID pop:POPTR_0013s09090g
description POPTRDRAFT_823801; zinc finger family protein
nr
ID XP_012079718.1
description PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
swissprot
ID Q84WF5
description Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana GN=At1g33475 PE=2 SV=1
trembl
ID A0A067K5X0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14846 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable vamp-like protein at1g33475

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38692: 134361-136303 , PASA_asmbl_38693: 134381-134803
cDNA
(Sanger)
(ID:Location)		 015_P02.ab1: 134361-135488 , 047_C10.ab1: 134361-135474

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000384_090 0.0 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
2 Hb_000608_030 0.0604012728 - - hypothetical protein JCGZ_18019 [Jatropha curcas]
3 Hb_003005_020 0.0605070821 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
4 Hb_003120_060 0.0817116754 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
5 Hb_063134_010 0.0828042206 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
6 Hb_002609_110 0.0840283971 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
7 Hb_003195_060 0.0867556496 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
8 Hb_001518_040 0.0892602647 - - PREDICTED: G patch domain-containing protein 11 [Populus euphratica]
9 Hb_000815_210 0.0914556553 - - uncoupling protein 3, partial [Manihot esculenta]
10 Hb_029510_140 0.0916062061 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
11 Hb_007192_080 0.096384394 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
12 Hb_144598_030 0.0965579071 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
13 Hb_002149_020 0.0966210196 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
14 Hb_000943_070 0.0972136717 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
15 Hb_000538_200 0.0983975484 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
16 Hb_000172_370 0.0989079391 - - -
17 Hb_002408_010 0.0994236609 - - cation-transporting atpase plant, putative [Ricinus communis]
18 Hb_000014_150 0.0998766603 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
19 Hb_141131_010 0.1010933584 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
20 Hb_000103_180 0.1011823944 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000384_090 Hb_000384_090 Hb_000608_030 Hb_000608_030 Hb_000384_090--Hb_000608_030 Hb_003005_020 Hb_003005_020 Hb_000384_090--Hb_003005_020 Hb_003120_060 Hb_003120_060 Hb_000384_090--Hb_003120_060 Hb_063134_010 Hb_063134_010 Hb_000384_090--Hb_063134_010 Hb_002609_110 Hb_002609_110 Hb_000384_090--Hb_002609_110 Hb_003195_060 Hb_003195_060 Hb_000384_090--Hb_003195_060 Hb_000608_030--Hb_003005_020 Hb_000815_210 Hb_000815_210 Hb_000608_030--Hb_000815_210 Hb_003406_010 Hb_003406_010 Hb_000608_030--Hb_003406_010 Hb_000943_070 Hb_000943_070 Hb_000608_030--Hb_000943_070 Hb_000608_030--Hb_003120_060 Hb_004440_090 Hb_004440_090 Hb_003005_020--Hb_004440_090 Hb_000172_370 Hb_000172_370 Hb_003005_020--Hb_000172_370 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_000398_180 Hb_000398_180 Hb_003005_020--Hb_000398_180 Hb_000019_230 Hb_000019_230 Hb_003120_060--Hb_000019_230 Hb_001214_130 Hb_001214_130 Hb_003120_060--Hb_001214_130 Hb_000188_100 Hb_000188_100 Hb_003120_060--Hb_000188_100 Hb_003120_060--Hb_003005_020 Hb_003106_130 Hb_003106_130 Hb_003120_060--Hb_003106_130 Hb_003038_030 Hb_003038_030 Hb_003120_060--Hb_003038_030 Hb_007193_100 Hb_007193_100 Hb_063134_010--Hb_007193_100 Hb_029510_140 Hb_029510_140 Hb_063134_010--Hb_029510_140 Hb_063134_010--Hb_003005_020 Hb_000175_070 Hb_000175_070 Hb_063134_010--Hb_000175_070 Hb_063134_010--Hb_000172_370 Hb_000057_040 Hb_000057_040 Hb_002609_110--Hb_000057_040 Hb_001252_080 Hb_001252_080 Hb_002609_110--Hb_001252_080 Hb_002149_020 Hb_002149_020 Hb_002609_110--Hb_002149_020 Hb_004195_160 Hb_004195_160 Hb_002609_110--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_002609_110--Hb_182026_020 Hb_000418_100 Hb_000418_100 Hb_002609_110--Hb_000418_100 Hb_008511_050 Hb_008511_050 Hb_003195_060--Hb_008511_050 Hb_003195_060--Hb_002609_110 Hb_003195_070 Hb_003195_070 Hb_003195_060--Hb_003195_070 Hb_002811_360 Hb_002811_360 Hb_003195_060--Hb_002811_360 Hb_006332_010 Hb_006332_010 Hb_003195_060--Hb_006332_010 Hb_005754_060 Hb_005754_060 Hb_003195_060--Hb_005754_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.853 10.925 7.52458 17.9839 44.619 60.274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.7933 34.0929 27.9979 12.2096 14.2343

CAGE analysis