Hb_000175_070

Information

Type -
Description -
Location Contig175: 47384-51150
Sequence    

Annotation

kegg
ID rcu:RCOM_0901060
description U3 small nucleolar RNA-associated protein, putative
nr
ID XP_012073156.1
description PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
swissprot
ID Q8S1Z1
description Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2
trembl
ID A0A067KLE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06122 PE=4 SV=1
Gene Ontology
ID GO:0005730
description probable u3 small nucleolar rna-associated protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16667: 47051-51068
cDNA
(Sanger)
(ID:Location)		 030_E22.ab1: 47051-50725 , 044_F20.ab1: 47051-50831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_070 0.0 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
2 Hb_007193_100 0.0423651156 - - syntaxin family protein [Populus trichocarpa]
3 Hb_000317_430 0.0524962963 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
4 Hb_029510_140 0.0595234531 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
5 Hb_118419_020 0.0609139778 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
6 Hb_006788_070 0.0717627386 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
7 Hb_009558_020 0.0747683036 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
8 Hb_000103_140 0.0755286971 - - ribosomal protein S3a [Populus trichocarpa]
9 Hb_000365_360 0.0758571047 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
10 Hb_063134_010 0.0776431958 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
11 Hb_133271_020 0.0780903005 - - prohibitin, putative [Ricinus communis]
12 Hb_003125_040 0.0785601761 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
13 Hb_001246_100 0.0791505709 - - Ras-related small GTP-binding family protein [Theobroma cacao]
14 Hb_001454_140 0.081180654 - - protein arginine n-methyltransferase, putative [Ricinus communis]
15 Hb_010436_070 0.0817009722 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
16 Hb_004724_100 0.082590656 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
17 Hb_060809_010 0.0840535397 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
18 Hb_004453_150 0.0846228951 - - BnaC02g13240D [Brassica napus]
19 Hb_003005_020 0.0847534968 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
20 Hb_141131_010 0.084984826 - - Diphthamide biosynthesis protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000175_070 Hb_000175_070 Hb_007193_100 Hb_007193_100 Hb_000175_070--Hb_007193_100 Hb_000317_430 Hb_000317_430 Hb_000175_070--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_000175_070--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_007193_100--Hb_000317_430 Hb_007193_100--Hb_029510_140 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_000035_380 Hb_000035_380 Hb_000317_430--Hb_000035_380 Hb_000317_430--Hb_118419_020 Hb_060809_010 Hb_060809_010 Hb_000317_430--Hb_060809_010 Hb_000365_360 Hb_000365_360 Hb_000317_430--Hb_000365_360 Hb_029510_140--Hb_063134_010 Hb_001518_040 Hb_001518_040 Hb_029510_140--Hb_001518_040 Hb_003005_020 Hb_003005_020 Hb_029510_140--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_029510_140--Hb_010436_070 Hb_118419_020--Hb_010436_070 Hb_125000_010 Hb_125000_010 Hb_118419_020--Hb_125000_010 Hb_002097_110 Hb_002097_110 Hb_118419_020--Hb_002097_110 Hb_000023_140 Hb_000023_140 Hb_006788_070--Hb_000023_140 Hb_011310_070 Hb_011310_070 Hb_006788_070--Hb_011310_070 Hb_006788_070--Hb_009558_020 Hb_005063_040 Hb_005063_040 Hb_006788_070--Hb_005063_040 Hb_006788_070--Hb_007193_100 Hb_000671_100 Hb_000671_100 Hb_009558_020--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_009558_020--Hb_010261_020 Hb_009558_020--Hb_000365_360 Hb_009558_020--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.1982 8.94293 9.19482 18.8427 50.5612 85.7927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.1507 57.1435 41.2237 21.7714 11.6679

CAGE analysis