Hb_005063_040

Information

Type -
Description -
Location Contig5063: 58906-69957
Sequence    

Annotation

kegg
ID rcu:RCOM_0484420
description ring finger protein, putative
nr
ID XP_012089274.1
description PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
swissprot
ID Q94AY3
description E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1
trembl
ID A0A067JLH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23506 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin protein ligase drip2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46138: 59108-69891 , PASA_asmbl_46139: 68980-69291 , PASA_asmbl_46140: 67042-67250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005063_040 0.0 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
2 Hb_076787_010 0.0638237599 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
3 Hb_002616_050 0.0705630117 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
4 Hb_007101_100 0.0715412884 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
5 Hb_028872_140 0.0750766826 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
6 Hb_003005_020 0.075153387 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
7 Hb_001030_120 0.0753969772 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
8 Hb_000363_500 0.0762380577 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
9 Hb_006447_010 0.0768717039 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
10 Hb_007380_070 0.0779995759 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
11 Hb_028639_060 0.078102332 - - transporter, putative [Ricinus communis]
12 Hb_000023_140 0.0792302962 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
13 Hb_000032_570 0.0794165804 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
14 Hb_003540_040 0.0798122143 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
15 Hb_001454_210 0.0798584072 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
16 Hb_000134_090 0.0807987477 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
17 Hb_022137_060 0.0808766303 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
18 Hb_001855_010 0.082384266 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
19 Hb_001776_110 0.0827687843 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
20 Hb_001214_130 0.0835744269 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]

Gene co-expression network

sample Hb_005063_040 Hb_005063_040 Hb_076787_010 Hb_076787_010 Hb_005063_040--Hb_076787_010 Hb_002616_050 Hb_002616_050 Hb_005063_040--Hb_002616_050 Hb_007101_100 Hb_007101_100 Hb_005063_040--Hb_007101_100 Hb_028872_140 Hb_028872_140 Hb_005063_040--Hb_028872_140 Hb_003005_020 Hb_003005_020 Hb_005063_040--Hb_003005_020 Hb_001030_120 Hb_001030_120 Hb_005063_040--Hb_001030_120 Hb_000085_060 Hb_000085_060 Hb_076787_010--Hb_000085_060 Hb_001776_110 Hb_001776_110 Hb_076787_010--Hb_001776_110 Hb_001862_190 Hb_001862_190 Hb_076787_010--Hb_001862_190 Hb_000179_170 Hb_000179_170 Hb_076787_010--Hb_000179_170 Hb_006692_030 Hb_006692_030 Hb_076787_010--Hb_006692_030 Hb_000363_500 Hb_000363_500 Hb_002616_050--Hb_000363_500 Hb_000023_140 Hb_000023_140 Hb_002616_050--Hb_000023_140 Hb_004072_020 Hb_004072_020 Hb_002616_050--Hb_004072_020 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020 Hb_004374_200 Hb_004374_200 Hb_007101_100--Hb_004374_200 Hb_001454_140 Hb_001454_140 Hb_007101_100--Hb_001454_140 Hb_002232_170 Hb_002232_170 Hb_007101_100--Hb_002232_170 Hb_002374_160 Hb_002374_160 Hb_007101_100--Hb_002374_160 Hb_000963_190 Hb_000963_190 Hb_007101_100--Hb_000963_190 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_004440_090 Hb_004440_090 Hb_003005_020--Hb_004440_090 Hb_000172_370 Hb_000172_370 Hb_003005_020--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_003005_020--Hb_000384_090 Hb_000608_030 Hb_000608_030 Hb_003005_020--Hb_000608_030 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_003005_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_001030_120--Hb_028872_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0028 12.1935 11.8778 13.3294 38.5585 57.2618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.9085 32.5365 36.0769 14.8429 12.1979

CAGE analysis