Hb_000179_170

Information

Type -
Description -
Location Contig179: 179079-183230
Sequence    

Annotation

kegg
ID cmo:103492352
description protein bem46
nr
ID XP_012077006.1
description PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
swissprot
ID P54069
description Protein bem46 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bem46 PE=2 SV=3
trembl
ID A0A067KFV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07454 PE=4 SV=1
Gene Ontology
ID GO:0005783
description protein bem46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17283: 179037-184299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_170 0.0 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
2 Hb_076787_010 0.0793313276 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
3 Hb_022137_060 0.0848114861 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
4 Hb_000529_160 0.0870421797 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
5 Hb_002400_220 0.0871851559 - - Vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_150360_030 0.087219301 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
7 Hb_001135_050 0.0873290911 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
8 Hb_010120_030 0.0924881595 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
9 Hb_033843_010 0.0937393673 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
10 Hb_001009_040 0.0944262883 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
11 Hb_005063_040 0.0957711699 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
12 Hb_004310_030 0.098349319 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
13 Hb_000465_430 0.0990425737 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
14 Hb_159558_030 0.0991539624 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
15 Hb_000500_130 0.0995012547 - - small GTPase [Hevea brasiliensis]
16 Hb_007894_140 0.0996338372 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
17 Hb_007254_040 0.1000365153 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
18 Hb_000169_010 0.1008871793 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
19 Hb_001221_410 0.1008988645 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
20 Hb_000808_040 0.1013558811 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000179_170 Hb_000179_170 Hb_076787_010 Hb_076787_010 Hb_000179_170--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_000179_170--Hb_022137_060 Hb_000529_160 Hb_000529_160 Hb_000179_170--Hb_000529_160 Hb_002400_220 Hb_002400_220 Hb_000179_170--Hb_002400_220 Hb_150360_030 Hb_150360_030 Hb_000179_170--Hb_150360_030 Hb_001135_050 Hb_001135_050 Hb_000179_170--Hb_001135_050 Hb_005063_040 Hb_005063_040 Hb_076787_010--Hb_005063_040 Hb_000085_060 Hb_000085_060 Hb_076787_010--Hb_000085_060 Hb_001776_110 Hb_001776_110 Hb_076787_010--Hb_001776_110 Hb_001862_190 Hb_001862_190 Hb_076787_010--Hb_001862_190 Hb_006692_030 Hb_006692_030 Hb_076787_010--Hb_006692_030 Hb_006663_100 Hb_006663_100 Hb_022137_060--Hb_006663_100 Hb_010120_030 Hb_010120_030 Hb_022137_060--Hb_010120_030 Hb_000120_800 Hb_000120_800 Hb_022137_060--Hb_000120_800 Hb_000359_170 Hb_000359_170 Hb_022137_060--Hb_000359_170 Hb_000009_170 Hb_000009_170 Hb_022137_060--Hb_000009_170 Hb_012760_170 Hb_012760_170 Hb_022137_060--Hb_012760_170 Hb_000365_310 Hb_000365_310 Hb_000529_160--Hb_000365_310 Hb_000299_040 Hb_000299_040 Hb_000529_160--Hb_000299_040 Hb_000529_160--Hb_010120_030 Hb_000529_160--Hb_076787_010 Hb_000529_160--Hb_022137_060 Hb_159558_030 Hb_159558_030 Hb_002400_220--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_002400_220--Hb_000500_130 Hb_007441_340 Hb_007441_340 Hb_002400_220--Hb_007441_340 Hb_033491_010 Hb_033491_010 Hb_002400_220--Hb_033491_010 Hb_001269_150 Hb_001269_150 Hb_002400_220--Hb_001269_150 Hb_002400_220--Hb_000359_170 Hb_004310_130 Hb_004310_130 Hb_150360_030--Hb_004310_130 Hb_007218_080 Hb_007218_080 Hb_150360_030--Hb_007218_080 Hb_000053_130 Hb_000053_130 Hb_150360_030--Hb_000053_130 Hb_001635_170 Hb_001635_170 Hb_150360_030--Hb_001635_170 Hb_001369_180 Hb_001369_180 Hb_150360_030--Hb_001369_180 Hb_000076_120 Hb_000076_120 Hb_150360_030--Hb_000076_120 Hb_001246_090 Hb_001246_090 Hb_001135_050--Hb_001246_090 Hb_003392_040 Hb_003392_040 Hb_001135_050--Hb_003392_040 Hb_000169_010 Hb_000169_010 Hb_001135_050--Hb_000169_010 Hb_007254_040 Hb_007254_040 Hb_001135_050--Hb_007254_040 Hb_000638_080 Hb_000638_080 Hb_001135_050--Hb_000638_080 Hb_004048_070 Hb_004048_070 Hb_001135_050--Hb_004048_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.7453 11.5977 15.7508 21.4948 40.4796 46.7712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.5875 27.6945 26.1558 13.9486 9.8144

CAGE analysis