Hb_000365_310

Information

Type -
Description -
Location Contig365: 295329-310134
Sequence    

Annotation

kegg
ID rcu:RCOM_0126470
description auxin:hydrogen symporter, putative
nr
ID XP_002531815.1
description auxin:hydrogen symporter, putative [Ricinus communis]
swissprot
ID O14197
description Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
trembl
ID B9T0P6
description Auxin:hydrogen symporter, putative OS=Ricinus communis GN=RCOM_0126470 PE=4 SV=1
Gene Ontology
ID GO:0016021
description uncharacterized transporter ybr287w

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37593: 295436-310060 , PASA_asmbl_37594: 295457-310025 , PASA_asmbl_37595: 295668-310025 , PASA_asmbl_37596: 295436-310060 , PASA_asmbl_37597: 295457-310025 , PASA_asmbl_37598: 295668-310025 , PASA_asmbl_37599: 308384-308914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_310 0.0 - - auxin:hydrogen symporter, putative [Ricinus communis]
2 Hb_000529_160 0.0724166837 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
3 Hb_010120_030 0.0846052231 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_002112_040 0.0919406723 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
5 Hb_000363_500 0.0931538025 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
6 Hb_002616_050 0.0941454237 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
7 Hb_001998_230 0.0946283983 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
8 Hb_000023_140 0.0962958029 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
9 Hb_071736_010 0.0971597928 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
10 Hb_024714_100 0.0976154929 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
11 Hb_004072_020 0.0987582483 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
12 Hb_021409_020 0.1016032992 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
13 Hb_000169_090 0.1028226853 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
14 Hb_000299_040 0.1030458515 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
15 Hb_002149_020 0.1036171775 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
16 Hb_022137_060 0.1082816438 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
17 Hb_002811_360 0.1086891749 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
18 Hb_001135_160 0.1087363937 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
19 Hb_001266_080 0.1094522286 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
20 Hb_001252_100 0.1097761181 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_310 Hb_000365_310 Hb_000529_160 Hb_000529_160 Hb_000365_310--Hb_000529_160 Hb_010120_030 Hb_010120_030 Hb_000365_310--Hb_010120_030 Hb_002112_040 Hb_002112_040 Hb_000365_310--Hb_002112_040 Hb_000363_500 Hb_000363_500 Hb_000365_310--Hb_000363_500 Hb_002616_050 Hb_002616_050 Hb_000365_310--Hb_002616_050 Hb_001998_230 Hb_001998_230 Hb_000365_310--Hb_001998_230 Hb_000299_040 Hb_000299_040 Hb_000529_160--Hb_000299_040 Hb_000529_160--Hb_010120_030 Hb_000179_170 Hb_000179_170 Hb_000529_160--Hb_000179_170 Hb_076787_010 Hb_076787_010 Hb_000529_160--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_000529_160--Hb_022137_060 Hb_003656_130 Hb_003656_130 Hb_010120_030--Hb_003656_130 Hb_010120_030--Hb_022137_060 Hb_000012_090 Hb_000012_090 Hb_010120_030--Hb_000012_090 Hb_000049_040 Hb_000049_040 Hb_010120_030--Hb_000049_040 Hb_002112_040--Hb_001998_230 Hb_002112_040--Hb_000363_500 Hb_004072_020 Hb_004072_020 Hb_002112_040--Hb_004072_020 Hb_000676_290 Hb_000676_290 Hb_002112_040--Hb_000676_290 Hb_002112_040--Hb_002616_050 Hb_004128_190 Hb_004128_190 Hb_002112_040--Hb_004128_190 Hb_000363_500--Hb_002616_050 Hb_003847_080 Hb_003847_080 Hb_000363_500--Hb_003847_080 Hb_002078_150 Hb_002078_150 Hb_000363_500--Hb_002078_150 Hb_000363_500--Hb_004128_190 Hb_000465_430 Hb_000465_430 Hb_000363_500--Hb_000465_430 Hb_005063_040 Hb_005063_040 Hb_000363_500--Hb_005063_040 Hb_000023_140 Hb_000023_140 Hb_002616_050--Hb_000023_140 Hb_002616_050--Hb_004072_020 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020 Hb_010180_010 Hb_010180_010 Hb_001998_230--Hb_010180_010 Hb_001998_230--Hb_004072_020 Hb_024714_100 Hb_024714_100 Hb_001998_230--Hb_024714_100 Hb_001998_230--Hb_000363_500 Hb_012799_160 Hb_012799_160 Hb_001998_230--Hb_012799_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.8954 3.72251 6.16878 19.9811 29.4763 38.8126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6758 19.8645 24.9478 14.1841 10.7168

CAGE analysis