Hb_000363_500

Information

Type -
Description -
Location Contig363: 421099-427223
Sequence    

Annotation

kegg
ID fve:101313780
description EH domain-containing protein 1-like
nr
ID XP_012070903.1
description PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q94CF0
description EH domain-containing protein 1 OS=Arabidopsis thaliana GN=EHD1 PE=1 SV=1
trembl
ID A0A067L542
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00946 PE=4 SV=1
Gene Ontology
ID GO:0005768
description eh domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37348: 421120-427014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_500 0.0 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
2 Hb_002616_050 0.0553027723 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
3 Hb_003847_080 0.0653749467 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
4 Hb_002078_150 0.0687389329 - - protein with unknown function [Ricinus communis]
5 Hb_004128_190 0.0713247873 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
6 Hb_000465_430 0.0759005055 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
7 Hb_005063_040 0.0762380577 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
8 Hb_001124_210 0.0763933922 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003005_020 0.0766980568 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
10 Hb_011689_080 0.0769695718 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
11 Hb_003058_130 0.078776799 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
12 Hb_002774_060 0.0795522013 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
13 Hb_004072_020 0.0797115499 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
14 Hb_004324_310 0.0797179044 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007441_120 0.0798813837 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
16 Hb_004440_090 0.0802774035 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
17 Hb_000529_190 0.0806316521 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
18 Hb_002149_020 0.0809382247 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
19 Hb_002112_040 0.0818123133 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
20 Hb_001998_230 0.0825809677 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_500 Hb_000363_500 Hb_002616_050 Hb_002616_050 Hb_000363_500--Hb_002616_050 Hb_003847_080 Hb_003847_080 Hb_000363_500--Hb_003847_080 Hb_002078_150 Hb_002078_150 Hb_000363_500--Hb_002078_150 Hb_004128_190 Hb_004128_190 Hb_000363_500--Hb_004128_190 Hb_000465_430 Hb_000465_430 Hb_000363_500--Hb_000465_430 Hb_005063_040 Hb_005063_040 Hb_000363_500--Hb_005063_040 Hb_000023_140 Hb_000023_140 Hb_002616_050--Hb_000023_140 Hb_004072_020 Hb_004072_020 Hb_002616_050--Hb_004072_020 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020 Hb_012305_050 Hb_012305_050 Hb_003847_080--Hb_012305_050 Hb_003847_080--Hb_004128_190 Hb_185830_020 Hb_185830_020 Hb_003847_080--Hb_185830_020 Hb_001124_210 Hb_001124_210 Hb_003847_080--Hb_001124_210 Hb_003847_080--Hb_002078_150 Hb_002078_150--Hb_004128_190 Hb_000103_560 Hb_000103_560 Hb_002078_150--Hb_000103_560 Hb_000398_180 Hb_000398_180 Hb_002078_150--Hb_000398_180 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_004545_060 Hb_004545_060 Hb_002078_150--Hb_004545_060 Hb_000245_130 Hb_000245_130 Hb_004128_190--Hb_000245_130 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_004128_190--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_004128_190--Hb_000024_080 Hb_012092_010 Hb_012092_010 Hb_000465_430--Hb_012092_010 Hb_002495_040 Hb_002495_040 Hb_000465_430--Hb_002495_040 Hb_003502_080 Hb_003502_080 Hb_000465_430--Hb_003502_080 Hb_033843_010 Hb_033843_010 Hb_000465_430--Hb_033843_010 Hb_005016_170 Hb_005016_170 Hb_000465_430--Hb_005016_170 Hb_000092_100 Hb_000092_100 Hb_000465_430--Hb_000092_100 Hb_076787_010 Hb_076787_010 Hb_005063_040--Hb_076787_010 Hb_007101_100 Hb_007101_100 Hb_005063_040--Hb_007101_100 Hb_028872_140 Hb_028872_140 Hb_005063_040--Hb_028872_140 Hb_003005_020 Hb_003005_020 Hb_005063_040--Hb_003005_020 Hb_001030_120 Hb_001030_120 Hb_005063_040--Hb_001030_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.8149 12.3187 15.9579 26.4379 43.2409 62.8664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.0401 43.3848 36.4102 21.6918 13.4629

CAGE analysis