Hb_002078_150

Information

Type -
Description -
Location Contig2078: 90499-108105
Sequence    

Annotation

kegg
ID rcu:RCOM_1080700
description protein with unknown function
nr
ID XP_002514927.1
description protein with unknown function [Ricinus communis]
swissprot
ID P51413
description 60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2
trembl
ID B9RMF8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080700 PE=3 SV=1
Gene Ontology
ID GO:0015934
description endoplasmic reticulum metallopeptidase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21419: 90632-92670 , PASA_asmbl_21420: 91310-91611 , PASA_asmbl_21421: 98034-99986 , PASA_asmbl_21422: 97340-99986 , PASA_asmbl_21424: 100046-100543 , PASA_asmbl_21425: 103487-105621 , PASA_asmbl_21426: 100987-105621 , PASA_asmbl_21427: 105623-107698
cDNA
(Sanger)
(ID:Location)		 002_H22.ab1: 90691-92670 , 003_P20.ab1: 90784-92670 , 006_D13.ab1: 90760-92670 , 006_L18.ab1: 90839-92669 , 011_C07.ab1: 90721-92670 , 011_E03.ab1: 90666-92637 , 014_J15.ab1: 90786-92670 , 019_O20.ab1: 90712-92626 , 020_G24.ab1: 90710-92626 , 038_P11.ab1: 90761-92670 , 038_P13.ab1: 90691-92626 , 044_A11.ab1: 90758-92670

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_150 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_004128_190 0.0482568262 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
3 Hb_000103_560 0.0596006053 - - ADP-ribosylation factor, putative [Ricinus communis]
4 Hb_000398_180 0.0599723041 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
5 Hb_003847_080 0.0642827727 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
6 Hb_001377_290 0.064471059 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
7 Hb_004545_060 0.0647151958 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
8 Hb_004324_310 0.0657392139 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003058_130 0.0674812133 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
10 Hb_000363_500 0.0687389329 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
11 Hb_000045_090 0.0705106581 - - PREDICTED: syntaxin-31 [Jatropha curcas]
12 Hb_000174_090 0.070658806 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
13 Hb_000613_140 0.07100296 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
14 Hb_001124_210 0.0717579905 - - conserved hypothetical protein [Ricinus communis]
15 Hb_125000_010 0.0718737223 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
16 Hb_000926_250 0.0722602729 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
17 Hb_003392_040 0.0724578141 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
18 Hb_141131_010 0.0738933354 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
19 Hb_000510_130 0.0742421013 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
20 Hb_001604_080 0.0747564001 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_150 Hb_002078_150 Hb_004128_190 Hb_004128_190 Hb_002078_150--Hb_004128_190 Hb_000103_560 Hb_000103_560 Hb_002078_150--Hb_000103_560 Hb_000398_180 Hb_000398_180 Hb_002078_150--Hb_000398_180 Hb_003847_080 Hb_003847_080 Hb_002078_150--Hb_003847_080 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_004545_060 Hb_004545_060 Hb_002078_150--Hb_004545_060 Hb_004128_190--Hb_003847_080 Hb_000245_130 Hb_000245_130 Hb_004128_190--Hb_000245_130 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_012305_050 Hb_012305_050 Hb_004128_190--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_004128_190--Hb_000024_080 Hb_063716_050 Hb_063716_050 Hb_000103_560--Hb_063716_050 Hb_000832_140 Hb_000832_140 Hb_000103_560--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_000103_560--Hb_001604_080 Hb_000815_040 Hb_000815_040 Hb_000103_560--Hb_000815_040 Hb_000529_190 Hb_000529_190 Hb_000103_560--Hb_000529_190 Hb_028872_140 Hb_028872_140 Hb_000398_180--Hb_028872_140 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070 Hb_003847_080--Hb_012305_050 Hb_185830_020 Hb_185830_020 Hb_003847_080--Hb_185830_020 Hb_001124_210 Hb_001124_210 Hb_003847_080--Hb_001124_210 Hb_000363_500 Hb_000363_500 Hb_003847_080--Hb_000363_500 Hb_001377_290--Hb_011689_080 Hb_003392_040 Hb_003392_040 Hb_001377_290--Hb_003392_040 Hb_001138_050 Hb_001138_050 Hb_001377_290--Hb_001138_050 Hb_001377_290--Hb_004195_160 Hb_010180_020 Hb_010180_020 Hb_004545_060--Hb_010180_020 Hb_000045_090 Hb_000045_090 Hb_004545_060--Hb_000045_090 Hb_004545_060--Hb_000103_560 Hb_141131_010 Hb_141131_010 Hb_004545_060--Hb_141131_010 Hb_003038_030 Hb_003038_030 Hb_004545_060--Hb_003038_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.2008 32.6835 25.3333 53.9738 76.1373 112.154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.7687 110.04 80.2474 44.182 18.5792

CAGE analysis