Hb_003847_080

Information

Type -
Description -
Location Contig3847: 49250-54008
Sequence    

Annotation

kegg
ID rcu:RCOM_1122750
description hypothetical protein
nr
ID XP_012089412.1
description PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23611 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38724: 49294-50599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003847_080 0.0 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
2 Hb_012305_050 0.0480530359 - - unnamed protein product [Coffea canephora]
3 Hb_004128_190 0.0573142989 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
4 Hb_185830_020 0.0575653259 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_001124_210 0.0598203719 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002078_150 0.0642827727 - - protein with unknown function [Ricinus communis]
7 Hb_000363_500 0.0653749467 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
8 Hb_000245_130 0.0670918783 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
9 Hb_000069_160 0.0805698829 - - -
10 Hb_002811_360 0.0812258976 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
11 Hb_000700_110 0.0826426154 - - Vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_000045_090 0.0837786866 - - PREDICTED: syntaxin-31 [Jatropha curcas]
13 Hb_022250_130 0.0856230475 - - inositol hexaphosphate kinase, putative [Ricinus communis]
14 Hb_002477_330 0.0857860746 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
15 Hb_011310_190 0.0866051969 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
16 Hb_001366_190 0.0873805795 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
17 Hb_000003_480 0.0874798353 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
18 Hb_000103_180 0.0875887509 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
19 Hb_050455_010 0.0877331452 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
20 Hb_002217_310 0.0879403507 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]

Gene co-expression network

sample Hb_003847_080 Hb_003847_080 Hb_012305_050 Hb_012305_050 Hb_003847_080--Hb_012305_050 Hb_004128_190 Hb_004128_190 Hb_003847_080--Hb_004128_190 Hb_185830_020 Hb_185830_020 Hb_003847_080--Hb_185830_020 Hb_001124_210 Hb_001124_210 Hb_003847_080--Hb_001124_210 Hb_002078_150 Hb_002078_150 Hb_003847_080--Hb_002078_150 Hb_000363_500 Hb_000363_500 Hb_003847_080--Hb_000363_500 Hb_012305_050--Hb_004128_190 Hb_022250_130 Hb_022250_130 Hb_012305_050--Hb_022250_130 Hb_000245_130 Hb_000245_130 Hb_012305_050--Hb_000245_130 Hb_012305_050--Hb_185830_020 Hb_000347_200 Hb_000347_200 Hb_012305_050--Hb_000347_200 Hb_004128_190--Hb_002078_150 Hb_004128_190--Hb_000245_130 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_000024_080 Hb_000024_080 Hb_004128_190--Hb_000024_080 Hb_010691_060 Hb_010691_060 Hb_185830_020--Hb_010691_060 Hb_002982_040 Hb_002982_040 Hb_185830_020--Hb_002982_040 Hb_000956_030 Hb_000956_030 Hb_185830_020--Hb_000956_030 Hb_000103_180 Hb_000103_180 Hb_185830_020--Hb_000103_180 Hb_185830_020--Hb_022250_130 Hb_141131_010 Hb_141131_010 Hb_001124_210--Hb_141131_010 Hb_001124_210--Hb_002078_150 Hb_158092_070 Hb_158092_070 Hb_001124_210--Hb_158092_070 Hb_123475_010 Hb_123475_010 Hb_001124_210--Hb_123475_010 Hb_001124_210--Hb_000363_500 Hb_000103_560 Hb_000103_560 Hb_002078_150--Hb_000103_560 Hb_000398_180 Hb_000398_180 Hb_002078_150--Hb_000398_180 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_004545_060 Hb_004545_060 Hb_002078_150--Hb_004545_060 Hb_002616_050 Hb_002616_050 Hb_000363_500--Hb_002616_050 Hb_000363_500--Hb_002078_150 Hb_000363_500--Hb_004128_190 Hb_000465_430 Hb_000465_430 Hb_000363_500--Hb_000465_430 Hb_005063_040 Hb_005063_040 Hb_000363_500--Hb_005063_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5133 10.0687 5.25192 16.0515 21.1226 35.1912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4781 23.174 18.5695 14.4526 6.11931

CAGE analysis