Hb_010691_060

Information

Type -
Description -
Location Contig10691: 47815-50308
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05090g
description POPTRDRAFT_718718; hypothetical protein
nr
ID XP_012069155.1
description PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
swissprot
ID Q9M3V8
description 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1
trembl
ID A0A067L8U3
description 40S ribosomal protein S6 OS=Jatropha curcas GN=JCGZ_24919 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02116: 47863-50309
cDNA
(Sanger)
(ID:Location)		 030_D10.ab1: 48186-50309 , 033_G08.ab1: 48247-50309 , 046_L23.ab1: 48168-50309

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010691_060 0.0 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
2 Hb_001766_150 0.070055958 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
3 Hb_000157_030 0.0706250081 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
4 Hb_003266_050 0.072668952 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
5 Hb_185830_020 0.0726719093 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_002391_300 0.0757868439 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
7 Hb_003058_130 0.0761563817 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
8 Hb_012799_130 0.0780592504 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
9 Hb_012092_010 0.078857639 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
10 Hb_000465_430 0.0795220777 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
11 Hb_000003_160 0.0796044093 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
12 Hb_005016_170 0.0804466592 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012008_020 0.0819244718 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
14 Hb_002107_160 0.0831619666 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_009557_070 0.0835347895 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001358_030 0.0851718446 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
17 Hb_144598_030 0.0851804101 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
18 Hb_002272_180 0.0858585326 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
19 Hb_000189_340 0.0869624023 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
20 Hb_000956_030 0.0876341239 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]

Gene co-expression network

sample Hb_010691_060 Hb_010691_060 Hb_001766_150 Hb_001766_150 Hb_010691_060--Hb_001766_150 Hb_000157_030 Hb_000157_030 Hb_010691_060--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_010691_060--Hb_003266_050 Hb_185830_020 Hb_185830_020 Hb_010691_060--Hb_185830_020 Hb_002391_300 Hb_002391_300 Hb_010691_060--Hb_002391_300 Hb_003058_130 Hb_003058_130 Hb_010691_060--Hb_003058_130 Hb_000189_340 Hb_000189_340 Hb_001766_150--Hb_000189_340 Hb_001047_100 Hb_001047_100 Hb_001766_150--Hb_001047_100 Hb_003044_100 Hb_003044_100 Hb_001766_150--Hb_003044_100 Hb_001766_150--Hb_000157_030 Hb_105386_010 Hb_105386_010 Hb_001766_150--Hb_105386_010 Hb_002107_160 Hb_002107_160 Hb_000157_030--Hb_002107_160 Hb_000157_030--Hb_002391_300 Hb_004440_050 Hb_004440_050 Hb_000157_030--Hb_004440_050 Hb_000157_030--Hb_003266_050 Hb_005389_150 Hb_005389_150 Hb_003266_050--Hb_005389_150 Hb_000815_040 Hb_000815_040 Hb_003266_050--Hb_000815_040 Hb_001278_110 Hb_001278_110 Hb_003266_050--Hb_001278_110 Hb_002890_140 Hb_002890_140 Hb_003266_050--Hb_002890_140 Hb_003266_050--Hb_003058_130 Hb_003847_080 Hb_003847_080 Hb_185830_020--Hb_003847_080 Hb_002982_040 Hb_002982_040 Hb_185830_020--Hb_002982_040 Hb_000956_030 Hb_000956_030 Hb_185830_020--Hb_000956_030 Hb_000103_180 Hb_000103_180 Hb_185830_020--Hb_000103_180 Hb_022250_130 Hb_022250_130 Hb_185830_020--Hb_022250_130 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_003406_010 Hb_003406_010 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_007218_080 Hb_007218_080 Hb_002391_300--Hb_007218_080 Hb_003392_040 Hb_003392_040 Hb_003058_130--Hb_003392_040 Hb_011689_080 Hb_011689_080 Hb_003058_130--Hb_011689_080 Hb_033843_010 Hb_033843_010 Hb_003058_130--Hb_033843_010 Hb_000103_560 Hb_000103_560 Hb_003058_130--Hb_000103_560 Hb_002078_150 Hb_002078_150 Hb_003058_130--Hb_002078_150 Hb_039837_010 Hb_039837_010 Hb_003058_130--Hb_039837_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
199.676 67.8743 103.942 116.802 196.74 346.049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
213.537 220.574 111.144 137.831 56.4768

CAGE analysis