Hb_002107_160

Information

Type -
Description -
Location Contig2107: 96010-99807
Sequence    

Annotation

kegg
ID egr:104450447
description ribonuclease P protein subunit p25-like protein
nr
ID XP_012073732.1
description PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
swissprot
ID Q99JH1
description Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1
trembl
ID A0A067KKV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08172 PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease p protein subunit p25-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21823: 96056-99819 , PASA_asmbl_21824: 98880-99250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_160 0.0 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
2 Hb_001158_220 0.0751041081 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
3 Hb_000157_030 0.0810486238 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
4 Hb_010691_060 0.0831619666 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
5 Hb_002495_040 0.0861784706 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
6 Hb_000120_500 0.0884385448 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
7 Hb_000465_430 0.0889991728 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
8 Hb_005016_170 0.0898805903 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000373_240 0.0912806024 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
10 Hb_000956_030 0.0921089121 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
11 Hb_004944_010 0.0924889646 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
12 Hb_007643_050 0.092789577 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000349_060 0.0944327599 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
14 Hb_000889_020 0.0945418945 - - ribosome biogenesis protein brix, putative [Ricinus communis]
15 Hb_001766_150 0.0949082461 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
16 Hb_007101_100 0.0956377726 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
17 Hb_000494_040 0.0959063474 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
18 Hb_004096_030 0.0968874664 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
19 Hb_031862_180 0.0973145707 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
20 Hb_070739_010 0.0987288532 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002107_160 Hb_002107_160 Hb_001158_220 Hb_001158_220 Hb_002107_160--Hb_001158_220 Hb_000157_030 Hb_000157_030 Hb_002107_160--Hb_000157_030 Hb_010691_060 Hb_010691_060 Hb_002107_160--Hb_010691_060 Hb_002495_040 Hb_002495_040 Hb_002107_160--Hb_002495_040 Hb_000120_500 Hb_000120_500 Hb_002107_160--Hb_000120_500 Hb_000465_430 Hb_000465_430 Hb_002107_160--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_001158_220--Hb_005016_170 Hb_002475_160 Hb_002475_160 Hb_001158_220--Hb_002475_160 Hb_007643_050 Hb_007643_050 Hb_001158_220--Hb_007643_050 Hb_061908_010 Hb_061908_010 Hb_001158_220--Hb_061908_010 Hb_001380_020 Hb_001380_020 Hb_001158_220--Hb_001380_020 Hb_000157_030--Hb_010691_060 Hb_001766_150 Hb_001766_150 Hb_000157_030--Hb_001766_150 Hb_002391_300 Hb_002391_300 Hb_000157_030--Hb_002391_300 Hb_004440_050 Hb_004440_050 Hb_000157_030--Hb_004440_050 Hb_003266_050 Hb_003266_050 Hb_000157_030--Hb_003266_050 Hb_010691_060--Hb_001766_150 Hb_010691_060--Hb_003266_050 Hb_185830_020 Hb_185830_020 Hb_010691_060--Hb_185830_020 Hb_010691_060--Hb_002391_300 Hb_003058_130 Hb_003058_130 Hb_010691_060--Hb_003058_130 Hb_002495_040--Hb_000465_430 Hb_003030_070 Hb_003030_070 Hb_002495_040--Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_002495_040--Hb_001369_180 Hb_012092_010 Hb_012092_010 Hb_002495_040--Hb_012092_010 Hb_000092_100 Hb_000092_100 Hb_002495_040--Hb_000092_100 Hb_001936_080 Hb_001936_080 Hb_002495_040--Hb_001936_080 Hb_000956_030 Hb_000956_030 Hb_000120_500--Hb_000956_030 Hb_003434_060 Hb_003434_060 Hb_000120_500--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000120_500--Hb_000390_060 Hb_005883_050 Hb_005883_050 Hb_000120_500--Hb_005883_050 Hb_028639_060 Hb_028639_060 Hb_000120_500--Hb_028639_060 Hb_004198_010 Hb_004198_010 Hb_000120_500--Hb_004198_010 Hb_000465_430--Hb_012092_010 Hb_003502_080 Hb_003502_080 Hb_000465_430--Hb_003502_080 Hb_033843_010 Hb_033843_010 Hb_000465_430--Hb_033843_010 Hb_000465_430--Hb_005016_170 Hb_000465_430--Hb_000092_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
184.115 67.3336 82.7299 76.4906 155.342 333.56
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
212.187 158.602 83.721 65.435 58.9703

CAGE analysis