Hb_028639_060

Information

Type -
Description -
Location Contig28639: 52918-55084
Sequence    

Annotation

kegg
ID rcu:RCOM_1280920
description transporter, putative
nr
ID XP_002523798.1
description transporter, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID M4ECW3
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra026623 PE=4 SV=1
Gene Ontology
ID GO:0016021
description phagocytic receptor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29895: 53968-55273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028639_060 0.0 - - transporter, putative [Ricinus communis]
2 Hb_001214_130 0.0548917249 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
3 Hb_003642_060 0.0580535647 - - hypothetical protein RCOM_1189860 [Ricinus communis]
4 Hb_000236_370 0.0600990016 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
5 Hb_000012_090 0.0605555574 - - 3'-5' exonuclease, putative [Ricinus communis]
6 Hb_000803_300 0.0671063687 - - nuclear movement protein nudc, putative [Ricinus communis]
7 Hb_001030_120 0.0678273816 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
8 Hb_010608_010 0.0679085629 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
9 Hb_000120_500 0.0689936912 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
10 Hb_002030_030 0.0694222404 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
11 Hb_003602_040 0.070951348 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
12 Hb_005306_110 0.0713021855 - - casein kinase, putative [Ricinus communis]
13 Hb_000032_570 0.0717256947 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
14 Hb_000905_190 0.0727561309 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
15 Hb_000956_030 0.0728901576 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
16 Hb_000322_050 0.0733559763 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
17 Hb_003453_020 0.0738786041 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
18 Hb_033642_010 0.0746671623 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
19 Hb_000943_070 0.0752288893 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
20 Hb_003728_020 0.0753455494 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_028639_060 Hb_028639_060 Hb_001214_130 Hb_001214_130 Hb_028639_060--Hb_001214_130 Hb_003642_060 Hb_003642_060 Hb_028639_060--Hb_003642_060 Hb_000236_370 Hb_000236_370 Hb_028639_060--Hb_000236_370 Hb_000012_090 Hb_000012_090 Hb_028639_060--Hb_000012_090 Hb_000803_300 Hb_000803_300 Hb_028639_060--Hb_000803_300 Hb_001030_120 Hb_001030_120 Hb_028639_060--Hb_001030_120 Hb_001214_130--Hb_003642_060 Hb_000905_190 Hb_000905_190 Hb_001214_130--Hb_000905_190 Hb_003120_060 Hb_003120_060 Hb_001214_130--Hb_003120_060 Hb_000943_070 Hb_000943_070 Hb_001214_130--Hb_000943_070 Hb_000803_150 Hb_000803_150 Hb_001214_130--Hb_000803_150 Hb_168707_030 Hb_168707_030 Hb_003642_060--Hb_168707_030 Hb_003642_060--Hb_000905_190 Hb_000089_220 Hb_000089_220 Hb_003642_060--Hb_000089_220 Hb_004195_160 Hb_004195_160 Hb_003642_060--Hb_004195_160 Hb_000645_150 Hb_000645_150 Hb_000236_370--Hb_000645_150 Hb_002097_090 Hb_002097_090 Hb_000236_370--Hb_002097_090 Hb_012305_070 Hb_012305_070 Hb_000236_370--Hb_012305_070 Hb_000956_030 Hb_000956_030 Hb_000236_370--Hb_000956_030 Hb_000186_280 Hb_000186_280 Hb_000236_370--Hb_000186_280 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000012_090--Hb_003453_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_000803_300--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0161 6.02448 4.49965 3.82938 17.3843 21.8916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6055 10.8433 11.5999 7.0908 3.24213

CAGE analysis