Hb_000012_090

Information

Type -
Description -
Location Contig12: 169139-180662
Sequence    

Annotation

kegg
ID rcu:RCOM_0798510
description 3'-5' exonuclease, putative
nr
ID XP_002516481.1
description 3'-5' exonuclease, putative [Ricinus communis]
swissprot
ID Q8CDF7
description Exonuclease 3'-5' domain-containing protein 1 OS=Mus musculus GN=Exd1 PE=2 SV=1
trembl
ID B9RRW2
description 3'-5' exonuclease, putative OS=Ricinus communis GN=RCOM_0798510 PE=4 SV=1
Gene Ontology
ID GO:0005622
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05978: 169045-180638 , PASA_asmbl_05979: 169045-180547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_090 0.0 - - 3'-5' exonuclease, putative [Ricinus communis]
2 Hb_028639_060 0.0605555574 - - transporter, putative [Ricinus communis]
3 Hb_006922_080 0.0635273267 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
4 Hb_003728_020 0.0661760543 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003453_020 0.0667141132 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
6 Hb_002014_080 0.0685424483 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
7 Hb_003602_040 0.068741136 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
8 Hb_000322_050 0.0689708224 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
9 Hb_003656_130 0.0697135233 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
10 Hb_000176_110 0.0765839879 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
11 Hb_000803_300 0.0775342005 - - nuclear movement protein nudc, putative [Ricinus communis]
12 Hb_009118_010 0.078667847 - - methionine aminopeptidase, putative [Ricinus communis]
13 Hb_022137_060 0.0804521903 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
14 Hb_001214_130 0.081233856 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
15 Hb_001135_160 0.0818068858 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
16 Hb_010120_030 0.0827571429 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
17 Hb_123475_010 0.0829688702 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
18 Hb_000956_030 0.0836665516 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
19 Hb_033491_010 0.0844129558 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
20 Hb_000390_060 0.0850152095 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]

Gene co-expression network

sample Hb_000012_090 Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_000012_090--Hb_028639_060 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000012_090--Hb_003453_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_001214_130 Hb_001214_130 Hb_028639_060--Hb_001214_130 Hb_003642_060 Hb_003642_060 Hb_028639_060--Hb_003642_060 Hb_000236_370 Hb_000236_370 Hb_028639_060--Hb_000236_370 Hb_000803_300 Hb_000803_300 Hb_028639_060--Hb_000803_300 Hb_001030_120 Hb_001030_120 Hb_028639_060--Hb_001030_120 Hb_006922_080--Hb_003453_020 Hb_000116_170 Hb_000116_170 Hb_006922_080--Hb_000116_170 Hb_000176_110 Hb_000176_110 Hb_006922_080--Hb_000176_110 Hb_009118_010 Hb_009118_010 Hb_006922_080--Hb_009118_010 Hb_003656_130 Hb_003656_130 Hb_006922_080--Hb_003656_130 Hb_005527_050 Hb_005527_050 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_000032_570 Hb_000032_570 Hb_003728_020--Hb_000032_570 Hb_001811_150 Hb_001811_150 Hb_003728_020--Hb_001811_150 Hb_000322_050 Hb_000322_050 Hb_003728_020--Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_003453_020--Hb_000176_110 Hb_003453_020--Hb_005527_050 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_024714_030 Hb_024714_030 Hb_002014_080--Hb_024714_030 Hb_014568_030 Hb_014568_030 Hb_002014_080--Hb_014568_030 Hb_000365_360 Hb_000365_360 Hb_002014_080--Hb_000365_360 Hb_000671_100 Hb_000671_100 Hb_002014_080--Hb_000671_100 Hb_002215_050 Hb_002215_050 Hb_002014_080--Hb_002215_050 Hb_012760_170 Hb_012760_170 Hb_003602_040--Hb_012760_170 Hb_003602_040--Hb_009118_010 Hb_003602_040--Hb_028639_060 Hb_000120_500 Hb_000120_500 Hb_003602_040--Hb_000120_500 Hb_006663_100 Hb_006663_100 Hb_003602_040--Hb_006663_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
134.854 42.239 25.0474 42.0043 174.756 176.109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
143.217 85.4732 87.3948 58.8905 24.5617

CAGE analysis