Hb_000322_050

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig322: 63716-71015
Sequence    

Annotation

kegg
ID rcu:RCOM_1047670
description DNA binding protein, putative
nr
ID XP_012076950.1
description PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
swissprot
ID F4IEY4
description Telomere repeat-binding factor 5 OS=Arabidopsis thaliana GN=At1g72740 PE=2 SV=1
trembl
ID A0A067KFT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07419 PE=4 SV=1
Gene Ontology
ID GO:0000786
description telomere repeat-binding factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34034: 63855-70414
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_050 0.0 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
2 Hb_003453_020 0.0614852705 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
3 Hb_000012_090 0.0689708224 - - 3'-5' exonuclease, putative [Ricinus communis]
4 Hb_028639_060 0.0733559763 - - transporter, putative [Ricinus communis]
5 Hb_003728_020 0.0738161137 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001221_230 0.0786924948 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000032_570 0.0795132079 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
8 Hb_000956_030 0.0800859175 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
9 Hb_143629_010 0.0803771695 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_008406_160 0.0812045568 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
11 Hb_009118_010 0.0816159327 - - methionine aminopeptidase, putative [Ricinus communis]
12 Hb_001741_140 0.0824336522 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
13 Hb_002149_020 0.0829732697 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
14 Hb_055590_010 0.0830070919 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005527_050 0.0831630531 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
16 Hb_000236_370 0.0846028275 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
17 Hb_171900_100 0.0849070097 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
18 Hb_003602_040 0.0853656288 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_000169_010 0.0871758163 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
20 Hb_000176_110 0.0877547957 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_000322_050 Hb_000322_050 Hb_003453_020 Hb_003453_020 Hb_000322_050--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000322_050--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_000322_050--Hb_028639_060 Hb_003728_020 Hb_003728_020 Hb_000322_050--Hb_003728_020 Hb_001221_230 Hb_001221_230 Hb_000322_050--Hb_001221_230 Hb_000032_570 Hb_000032_570 Hb_000322_050--Hb_000032_570 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_000012_090--Hb_028639_060 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_000012_090--Hb_003728_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_001214_130 Hb_001214_130 Hb_028639_060--Hb_001214_130 Hb_003642_060 Hb_003642_060 Hb_028639_060--Hb_003642_060 Hb_000236_370 Hb_000236_370 Hb_028639_060--Hb_000236_370 Hb_000803_300 Hb_000803_300 Hb_028639_060--Hb_000803_300 Hb_001030_120 Hb_001030_120 Hb_028639_060--Hb_001030_120 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_003728_020--Hb_000032_570 Hb_001811_150 Hb_001811_150 Hb_003728_020--Hb_001811_150 Hb_000035_380 Hb_000035_380 Hb_001221_230--Hb_000035_380 Hb_000317_430 Hb_000317_430 Hb_001221_230--Hb_000317_430 Hb_010128_130 Hb_010128_130 Hb_001221_230--Hb_010128_130 Hb_001221_230--Hb_000032_570 Hb_001221_230--Hb_001214_130 Hb_001741_140 Hb_001741_140 Hb_001221_230--Hb_001741_140 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0744 5.35264 5.48724 4.76586 25.8679 25.583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0564 16.4846 10.1154 11.2789 4.22195

CAGE analysis