Hb_000317_430

Information

Type transcription factor
Description TF Family: SET
Location Contig317: 281518-286817
Sequence    

Annotation

kegg
ID rcu:RCOM_1176880
description Protein SET DOMAIN GROUP, putative
nr
ID XP_012088394.1
description PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
swissprot
ID P38222
description Ribosomal lysine N-methyltransferase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RKM3 PE=1 SV=1
trembl
ID A0A067JW75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25882 PE=4 SV=1
Gene Ontology
ID GO:0016279
description ribosomal lysine n-methyltransferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33413: 281509-283683 , PASA_asmbl_33414: 283710-285708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_430 0.0 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
2 Hb_000035_380 0.0458531204 - - -
3 Hb_000175_070 0.0524962963 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
4 Hb_118419_020 0.0581825637 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
5 Hb_060809_010 0.0611636041 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
6 Hb_000365_360 0.0618798767 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
7 Hb_007193_100 0.0659488956 - - syntaxin family protein [Populus trichocarpa]
8 Hb_001221_230 0.074120228 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003125_040 0.0772099015 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
10 Hb_003120_060 0.0798658715 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
11 Hb_029510_140 0.0800997195 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
12 Hb_000015_210 0.0814377054 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
13 Hb_000152_430 0.0852873893 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
14 Hb_004662_030 0.0854145217 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
15 Hb_001214_130 0.0856044872 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
16 Hb_001246_100 0.085613527 - - Ras-related small GTP-binding family protein [Theobroma cacao]
17 Hb_002097_110 0.0858421026 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_063134_010 0.0861717937 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
19 Hb_133271_020 0.0863797627 - - prohibitin, putative [Ricinus communis]
20 Hb_098709_010 0.0869277835 - - PREDICTED: protein argonaute 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_430 Hb_000317_430 Hb_000035_380 Hb_000035_380 Hb_000317_430--Hb_000035_380 Hb_000175_070 Hb_000175_070 Hb_000317_430--Hb_000175_070 Hb_118419_020 Hb_118419_020 Hb_000317_430--Hb_118419_020 Hb_060809_010 Hb_060809_010 Hb_000317_430--Hb_060809_010 Hb_000365_360 Hb_000365_360 Hb_000317_430--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_000317_430--Hb_007193_100 Hb_000035_380--Hb_060809_010 Hb_001221_230 Hb_001221_230 Hb_000035_380--Hb_001221_230 Hb_000035_380--Hb_000365_360 Hb_000035_380--Hb_118419_020 Hb_001214_130 Hb_001214_130 Hb_000035_380--Hb_001214_130 Hb_000175_070--Hb_007193_100 Hb_029510_140 Hb_029510_140 Hb_000175_070--Hb_029510_140 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_010436_070 Hb_010436_070 Hb_118419_020--Hb_010436_070 Hb_125000_010 Hb_125000_010 Hb_118419_020--Hb_125000_010 Hb_002097_110 Hb_002097_110 Hb_118419_020--Hb_002097_110 Hb_118419_020--Hb_007193_100 Hb_003125_040 Hb_003125_040 Hb_060809_010--Hb_003125_040 Hb_003728_020 Hb_003728_020 Hb_060809_010--Hb_003728_020 Hb_060809_010--Hb_000175_070 Hb_003005_020 Hb_003005_020 Hb_060809_010--Hb_003005_020 Hb_098709_010 Hb_098709_010 Hb_000365_360--Hb_098709_010 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000365_360--Hb_118419_020 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_007193_100--Hb_029510_140 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7732 2.93877 2.09739 2.96503 15.1865 22.526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3862 16.4641 10.8366 5.64323 3.06975

CAGE analysis