Hb_125000_010

Information

Type -
Description -
Location Contig125000: 308-918
Sequence    

Annotation

kegg
ID cic:CICLE_v10026221mg
description hypothetical protein
nr
ID XP_012092636.1
description PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
swissprot
ID Q8LAL0
description Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=HCC2 PE=2 SV=1
trembl
ID A0A067LQK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24063 PE=4 SV=1
Gene Ontology
ID GO:0016787
description protein sco1 homolog mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125000_010 0.0 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
2 Hb_010436_070 0.0461243402 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
3 Hb_009711_030 0.0517637615 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
4 Hb_003540_040 0.0569859153 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
5 Hb_118419_020 0.0610804097 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
6 Hb_002411_170 0.0622346625 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
7 Hb_022250_040 0.063362341 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
8 Hb_001604_080 0.0637875267 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
9 Hb_000928_240 0.0666485676 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
10 Hb_002097_110 0.0682805485 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_148912_010 0.0686330731 - - conserved hypothetical protein [Ricinus communis]
12 Hb_063716_050 0.069589744 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
13 Hb_000398_180 0.0696282615 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
14 Hb_002603_100 0.0700043339 - - ATATH9, putative [Ricinus communis]
15 Hb_000703_140 0.0706193886 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
16 Hb_002078_150 0.0718737223 - - protein with unknown function [Ricinus communis]
17 Hb_000500_130 0.072390609 - - small GTPase [Hevea brasiliensis]
18 Hb_004324_310 0.0736516323 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000172_370 0.0738325349 - - -
20 Hb_001776_110 0.0738793968 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_125000_010 Hb_125000_010 Hb_010436_070 Hb_010436_070 Hb_125000_010--Hb_010436_070 Hb_009711_030 Hb_009711_030 Hb_125000_010--Hb_009711_030 Hb_003540_040 Hb_003540_040 Hb_125000_010--Hb_003540_040 Hb_118419_020 Hb_118419_020 Hb_125000_010--Hb_118419_020 Hb_002411_170 Hb_002411_170 Hb_125000_010--Hb_002411_170 Hb_022250_040 Hb_022250_040 Hb_125000_010--Hb_022250_040 Hb_010436_070--Hb_118419_020 Hb_000832_140 Hb_000832_140 Hb_010436_070--Hb_000832_140 Hb_010436_070--Hb_009711_030 Hb_002097_110 Hb_002097_110 Hb_010436_070--Hb_002097_110 Hb_000172_370 Hb_000172_370 Hb_010436_070--Hb_000172_370 Hb_009711_030--Hb_022250_040 Hb_000371_080 Hb_000371_080 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_001824_070 Hb_001824_070 Hb_009711_030--Hb_001824_070 Hb_009711_030--Hb_002097_110 Hb_001776_110 Hb_001776_110 Hb_003540_040--Hb_001776_110 Hb_003540_040--Hb_022250_040 Hb_000392_270 Hb_000392_270 Hb_003540_040--Hb_000392_270 Hb_003540_040--Hb_009711_030 Hb_003540_040--Hb_002097_110 Hb_000317_430 Hb_000317_430 Hb_118419_020--Hb_000317_430 Hb_000175_070 Hb_000175_070 Hb_118419_020--Hb_000175_070 Hb_118419_020--Hb_002097_110 Hb_007193_100 Hb_007193_100 Hb_118419_020--Hb_007193_100 Hb_004440_050 Hb_004440_050 Hb_002411_170--Hb_004440_050 Hb_003038_030 Hb_003038_030 Hb_002411_170--Hb_003038_030 Hb_148912_010 Hb_148912_010 Hb_002411_170--Hb_148912_010 Hb_010180_020 Hb_010180_020 Hb_002411_170--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_002411_170--Hb_001604_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5617 6.46437 8.17323 10.4251 24.95 31.706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.4716 34.8819 23.1064 8.60482 6.16977

CAGE analysis